RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	WDR78	Q5VTH9	848 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	NAA16	Q6N069	864 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	C16orf59	Q7L2K0	433 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	ABRA	Q8N0Z2	381 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	TIFA	Q96CG3	184 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	MAML3	Q96JK9	1138 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	SPATC1L	Q9H0A9	340 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	TBX21	Q9UL17	535 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	IVNS1ABP	Q9Y6Y0	642 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	COL11A1	P12107	1806 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	NAV1	Q8NEY1	1877 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846		A0A1W2PQ45	241 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846		A0A1W2PQY0	241 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846		A0A1W2PRG0	241 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	SRGAP3	O43295	1099 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	IGSF3	O75054	1194 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	ADAMTS4	O75173	837 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	BAG3	O95817	575 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	ERCC3	P19447	782 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	PBX2	P40425	430 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP14	P54578	494 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	DYNLL1	P63167	89 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	FPGS	Q05932	587 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	GABPA	Q06546	454 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	MAP3K12	Q12852	859 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	TRMT2A	Q8IZ69	625 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	TOX2	Q96NM4	488 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	FEZ1	Q99689	392 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	PBX4	Q9BYU1	374 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	PIH1D3	Q9NQM4	214 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	LRP2BP	Q9P2M1	347 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	THEG	Q9P2T0	379 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	NRBP1	Q9UHY1	535 aa		11.15	□□□□□ -0.62
PRKCH-208	ENST00000553846	MUC6	Q6W4X9	2439 aa		11.15	□□□□□ -0.63
PRKCH-208	ENST00000553846		E9PSI1	815 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	UQCRFS1P1	P0C7P4	283 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	EVX2	Q03828	476 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	SLFN5	Q08AF3	891 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	NEUROD6	Q96NK8	337 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	UHRF1	Q96T88	793 aa	Predicted RBP	11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	CWC22	Q9HCG8	908 aa	Known RBP	11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	SNRK	Q9NRH2	765 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	SMC4	Q9NTJ3	1288 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	SERPINB13	Q9UIV8	391 aa		11.14	□□□□□ -0.63
PRKCH-208	ENST00000553846	WDFY4	Q6ZS81	3184 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	PNMA6E	A0A0J9YXQ4	647 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	HLA-DOA	P06340	250 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	ZNF865	P0CJ78	1059 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	TAL1	P17542	331 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	RAB3GAP1	Q15042	981 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	TMEM240	Q5SV17	173 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	DPP9	Q86TI2	863 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	LENG1	Q96BZ8	264 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	FAM122A	Q96E09	287 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	PRDM12	Q9H4Q4	367 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	GPR108	Q9NPR9	543 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	XPNPEP3	Q9NQH7	507 aa		11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	NOB1	Q9ULX3	412 aa	Known RBP	11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-208	ENST00000553846	TCF20	Q9UGU0	1960 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	GRXCR1	A8MXD5	290 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	PQBP1	O60828	265 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	PGK1	P00558	417 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	TIMP1	P01033	207 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	BMP1	P13497	986 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	RAG1	P15918	1043 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	PLCD1	P51178	756 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	MRPS5	P82675	430 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	COG2	Q14746	738 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	SEPT2	Q15019	361 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	ABCB5	Q2M3G0	1257 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	ATF7IP	Q6VMQ6	1270 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	SIAH1	Q8IUQ4	282 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	MB21D1	Q8N884	522 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	KLHDC9	Q8NEP7	349 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	NECAB3	Q96P71	396 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	DBNDD2	Q9BQY9	259 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	NOL10	Q9BSC4	688 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	TRIM34	Q9BYJ4	488 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	MROH8	Q9H579	483 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	ADAMTS5	Q9UNA0	930 aa		11.12	□□□□□ -0.63
PRKCH-208	ENST00000553846	RARB	P10826	455 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	DSG3	P32926	999 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	ZAP70	P43403	619 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	CDK7	P50613	346 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	ZNF792	Q3KQV3	632 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	CERKL	Q49MI3	558 aa	Predicted RBP	11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	TNNI3K	Q59H18	835 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	MFSD5	Q6N075	450 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	RIOK1	Q9BRS2	568 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	API5	Q9BZZ5	524 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	TMEM39A	Q9NV64	488 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	HOXC10	Q9NYD6	342 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms