RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 ERICH2A1L162 156 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 CUTAO60888 179 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 DEXIO95424 95 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 MAP3K9P80192 1104 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 PKN1Q16512 942 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 TXNRD3Q86VQ6 643 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 NSUN4Q96CB9 384 aaKnown RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 MTA3Q9BTC8 594 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 FBXO2Q9UK22 296 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 JAG2Q9Y219 1238 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 GOLGA6L9A6NEM1 432 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 PLEKHA8P1O95397 391 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 BMP6P22004 513 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 RPS8P62241 208 aaKnown RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 MECOMQ03112 1051 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 EARS2Q5JPH6 523 aaKnown RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 RSRC2Q7L4I2 434 aaKnown RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 TRIM22Q8IYM9 498 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 TMTC2Q8N394 836 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 JMYQ8N9B5 988 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 WASF1Q92558 559 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 ESR2Q92731 530 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 C8orf37Q96NL8 207 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 ZSCAN10Q96SZ4 725 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-207ENST00000553837 PARD6BQ9BYG5 372 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 TMX1Q9H3N1 280 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 NARFQ9UHQ1 456 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 KCNH3Q9ULD8 1083 aa13.92□□□□□ -0.18
SHMT2-207ENST00000553837 CBFA2T2O43439 604 aa13.91□□□□□ -0.18
SHMT2-207ENST00000553837 ATP1A3P13637 1013 aa13.91□□□□□ -0.18
SHMT2-207ENST00000553837 TM4SF1P30408 202 aa13.91□□□□□ -0.18
SHMT2-207ENST00000553837 MDM2Q00987 491 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-207ENST00000553837 KRI1Q8N9T8 703 aaKnown RBP13.91□□□□□ -0.18
SHMT2-207ENST00000553837 BRIP1Q9BX63 1249 aa13.91□□□□□ -0.18
SHMT2-207ENST00000553837 FOXP1Q9H334 677 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-207ENST00000553837 USP17L12C9JPN9 530 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 USP17L21D6R901 530 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 NMT2O60551 498 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 FGRP09769 529 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 CYP2D6P10635 497 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 PRDX5P30044 214 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 RCAN1P53805 252 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 FANCCQ00597 558 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 PPP2R3AQ06190 1150 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 BRD3Q15059 726 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 USP49Q70CQ1 688 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 VPS54Q9P1Q0 977 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 MYH13Q9UKX3 1938 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 COL24A1Q17RW2 1714 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 CCDC151A5D8V7 595 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 WNT7AO00755 349 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 GNPATO15228 680 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 RPS6KA4O75676 772 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 ATP2B1P20020 1258 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 LMOD1P29536 600 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-207ENST00000553837 MAGEA9P43362 315 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 PDE4BQ07343 736 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 VPS72Q15906 364 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 NBPF5PQ86XG9 351 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-207ENST00000553837 GOLGA1Q92805 767 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 SETDB2Q96T68 719 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 EPC1Q9H2F5 836 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 AATFQ9NY61 560 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHMT2-207ENST00000553837 PCDHA5Q9Y5H7 936 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 MYH6P13533 1939 aa13.9□□□□□ -0.18
SHMT2-207ENST00000553837 IRS2Q9Y4H2 1338 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 CCDC196A0A1B0GTZ2 297 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 IKBKBO14920 756 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 KIF1CO43896 1103 aaKnown RBP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 RPS6KA5O75582 802 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 PRR29P0C7W0 189 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 PTPREP23469 700 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 TXLNAP40222 546 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 GYS2P54840 703 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 TROAPQ12815 778 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 SAFBQ15424 915 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 LONRF2Q1L5Z9 754 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 DPF2Q92785 391 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 NLRP3Q96P20 1036 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 CABP5Q9NP86 173 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 MRFAP1Q9Y605 127 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 BTAF1O14981 1849 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 MAP2K7O14733 419 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 FANCGO15287 622 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 TTC31Q49AM3 519 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 CNNM3Q8NE01 707 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 NGLY1Q96IV0 654 aa13.89□□□□□ -0.19
SHMT2-207ENST00000553837 RNF26Q9BY78 433 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 DCP1AQ9NPI6 582 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-207ENST00000553837 TNRC6CQ9HCJ0 1690 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 VWA3AA6NCI4 1184 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 ARHGAP6O43182 974 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 HIBADHP31937 336 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 GNG11P61952 73 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 RILPL1Q5EBL4 403 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 IFIT1BQ5T764 474 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 RC3H1Q5TC82 1133 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 GRAMD1CQ8IYS0 662 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms