RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 FOXJ1Q92949 421 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 RIOK1Q9BRS2 568 aaKnown RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 BRIP1Q9BX63 1249 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 PANK2Q9BZ23 570 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 NAPBQ9H115 298 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 RBSNQ9H1K0 784 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 RNF41Q9H4P4 317 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 EPB41L4AQ9HCS5 686 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 ZSWIM5Q9P217 1185 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 NRXN2Q9P2S2 1712 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 ECM29Q5VYK3 1845 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 LAMB1P07942 1786 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 MAGEB6P1A0A0J9YX57 407 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 KLF18A0A0U1RQI7 1052 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 SYCE3A1L190 88 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 H3BQV1 296 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 PLSCR1O15162 318 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 FIBPO43427 364 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 BBOX1O75936 387 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 CDKL5O76039 1030 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 SLURP2P0DP57 97 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 CYP7A1P22680 504 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 HOXA10P31260 410 aaPredicted RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 GRM5P41594 1212 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 CCT2P78371 535 aaKnown RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 PTSQ03393 145 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 GRAPQ13588 217 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 NTRK3Q16288 839 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 FAM182BQ5T319 152 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 SPTY2D1Q68D10 685 aaPredicted RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 DESI1Q6ICB0 168 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 RBM43Q6ZSC3 357 aaKnown RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 MFSD6Q6ZSS7 791 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 KRT27Q7Z3Y8 459 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 VPS37DQ86XT2 251 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 FAM43AQ8N2R8 423 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 LCORLQ8N3X6 602 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 FBXO18Q8NFZ0 1043 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 TDRD7Q8NHU6 1098 aaKnown RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 GRAPLQ8TC17 118 aaPredicted RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 NSUN4Q96CB9 384 aaKnown RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 PDLIM2Q96JY6 352 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 ZNF396Q96N95 335 aaPredicted RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 FUCA2Q9BTY2 467 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 TSPY26PQ9H489 355 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 ARMT1Q9H993 441 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 LY9Q9HBG7 655 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 TACC3Q9Y6A5 838 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 SLC4A4Q9Y6R1 1079 aa7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 COL1A1P02452 1464 aaPredicted RBP7.02□□□□□ -1.29
VIPAS39-204ENST00000553576 LRRC37AA6NMS7 1700 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 ANKRD31Q8N7Z5 1873 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 WTIPA6NIX2 430 aaPredicted RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 B4E1Z4 1266 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 GYS1P13807 737 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 CLCN1P35523 988 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 FOXD4L6Q3SYB3 417 aaPredicted RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 SBK1Q52WX2 424 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 CPLX2Q6PUV4 134 aaKnown RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 APOA5Q6Q788 366 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 FOXD4L3Q6VB84 417 aaPredicted RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 SMIM5Q71RC9 77 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 TMC4Q7Z404 712 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 BRAPQ7Z569 592 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 FERMT3Q86UX7 667 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 WDR66Q8TBY9 1149 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 ZNF384Q8TF68 577 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 ANP32BQ92688 251 aaKnown RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 DDX11Q96FC9 970 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 SPATA32Q96LK8 384 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 CRAMP1Q96RY5 1269 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 NCOA5Q9HCD5 579 aaKnown RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 ATP8A2Q9NTI2 1148 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 DDX19AQ9NUU7 478 aaKnown RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 PODXL2Q9NZ53 605 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 RTEL1Q9NZ71 1219 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 ORC3Q9UBD5 711 aaPredicted RBP7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 FOCADQ5VW36 1801 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 NEDD4P46934 1319 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 STK36Q9NRP7 1315 aa7.01□□□□□ -1.29
VIPAS39-204ENST00000553576 RGPD3A6NKT7 1758 aaPredicted RBP7□□□□□ -1.29
VIPAS39-204ENST00000553576 RGPD4Q7Z3J3 1758 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 DUOX1Q9NRD9 1551 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 MYH1P12882 1939 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 GOLGA8BA8MQT2 603 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 CPLX1O14810 134 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 SPTLC1O15269 473 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 ZBTB43O43298 467 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 PRKAB2O43741 272 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 SERPINB2P05120 415 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 IFNAR1P17181 557 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 ATP2B4P23634 1241 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 METAP2P50579 478 aaKnown RBP eCLIP7□□□□□ -1.29
VIPAS39-204ENST00000553576 CTDSPL2Q05D32 466 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 PPARAQ07869 468 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 SART3Q15020 963 aaKnown RBP7□□□□□ -1.29
VIPAS39-204ENST00000553576 TMEM67Q5HYA8 995 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 PRR5LQ6MZQ0 368 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms