RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 USP17L19D6RCP7 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L20D6RJB6 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 CDC45O75419 566 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 FGRP09769 529 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 BCRP11274 1271 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L24Q0WX57 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 RNF41Q9H4P4 317 aaPredicted RBP27.01■■□□□ 1.91
TDP1-206ENST00000553569 MTMR4Q9NYA4 1195 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 NYAP2Q9P242 653 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 CLIP2Q9UDT6 1046 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 CASC1Q6TDU7 716 aa27■■□□□ 1.91
TDP1-206ENST00000553569 KIAA1211Q6ZU35 1233 aa27■■□□□ 1.91
TDP1-206ENST00000553569 ANKRD13CQ8N6S4 541 aa27■■□□□ 1.91
TDP1-206ENST00000553569 P2RX7Q99572 595 aaKnown RBP27■■□□□ 1.91
TDP1-206ENST00000553569 GOPCQ9HD26 462 aa27■■□□□ 1.91
TDP1-206ENST00000553569 TTLL1O95922 423 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 HERVK_113P62684 666 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 LACTBP83111 547 aaPredicted RBP26.99■■□□□ 1.91
TDP1-206ENST00000553569 CAP1Q01518 475 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 LRRC47Q8N1G4 583 aaKnown RBP26.99■■□□□ 1.91
TDP1-206ENST00000553569 LPAR1Q92633 364 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 TANGO6Q9C0B7 1094 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 ARHGAP39Q9C0H5 1083 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 TRIM17Q9Y577 477 aa26.99■■□□□ 1.91
TDP1-206ENST00000553569 U3KPZ7 1027 aaPredicted RBP26.99■■□□□ 1.91
TDP1-206ENST00000553569 NMT2O60551 498 aa26.98■■□□□ 1.91
TDP1-206ENST00000553569 PCP11498 1178 aaKnown RBP26.98■■□□□ 1.91
TDP1-206ENST00000553569 GCLCP48506 637 aaPredicted RBP26.98■■□□□ 1.91
TDP1-206ENST00000553569 KIF22Q14807 665 aa26.98■■□□□ 1.91
TDP1-206ENST00000553569 CATSPERGQ6ZRH7 1159 aa26.98■■□□□ 1.91
TDP1-206ENST00000553569 MCOLN1Q9GZU1 580 aa26.98■■□□□ 1.91
TDP1-206ENST00000553569 STX8Q9UNK0 236 aa26.97■■□□□ 1.91
TDP1-206ENST00000553569 WDR46O15213 610 aaKnown RBP26.96■■□□□ 1.91
TDP1-206ENST00000553569 OTOP1Q7RTM1 612 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 NKX2-3Q8TAU0 364 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 EFCC1Q9HA90 598 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 ANO2Q9NQ90 1003 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 IL17RBQ9NRM6 502 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 RBM8AQ9Y5S9 174 aaKnown RBP26.96■■□□□ 1.91
TDP1-206ENST00000553569 MGAMO43451 1857 aa26.96■■□□□ 1.91
TDP1-206ENST00000553569 PEX10O60683 326 aa26.95■■□□□ 1.9
TDP1-206ENST00000553569 FAM110CQ1W6H9 321 aa26.95■■□□□ 1.9
TDP1-206ENST00000553569 PPP4R3BQ5MIZ7 849 aa26.95■■□□□ 1.9
TDP1-206ENST00000553569 SAMD1Q6SPF0 538 aaPredicted RBP26.95■■□□□ 1.9
TDP1-206ENST00000553569 ESR2Q92731 530 aa26.95■■□□□ 1.9
TDP1-206ENST00000553569 PAGR1Q9BTK6 254 aa26.95■■□□□ 1.9
TDP1-206ENST00000553569 LSG1Q9H089 658 aaKnown RBP26.95■■□□□ 1.9
TDP1-206ENST00000553569 B4E1Z4 1266 aa26.94■■□□□ 1.9
TDP1-206ENST00000553569 NDUFB10O96000 172 aa26.94■■□□□ 1.9
TDP1-206ENST00000553569 FAM83BQ5T0W9 1011 aa26.94■■□□□ 1.9
TDP1-206ENST00000553569 MAP4K1Q92918 833 aa26.94■■□□□ 1.9
TDP1-206ENST00000553569 NUP88Q99567 741 aaPredicted RBP26.94■■□□□ 1.9
TDP1-206ENST00000553569 PARP14Q460N5 1801 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 F5H6K3 240 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 FLOT1O75955 427 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 CYP21A2P08686 494 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 CTGFP29279 349 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 PSMC4P43686 418 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 KLRC3Q07444 240 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 ARHGEF6Q15052 776 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 GTF3C2Q8WUA4 911 aaPredicted RBP26.93■■□□□ 1.9
TDP1-206ENST00000553569 MKL1Q969V6 931 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 TXNRD2Q9NNW7 524 aa26.93■■□□□ 1.9
TDP1-206ENST00000553569 RLFQ13129 1914 aa26.92■■□□□ 1.9
TDP1-206ENST00000553569 SPDYE16A6NNV3 312 aaPredicted RBP26.92■■□□□ 1.9
TDP1-206ENST00000553569 KDM4AO75164 1064 aa26.92■■□□□ 1.9
TDP1-206ENST00000553569 FMNL1O95466 1100 aaPredicted RBP26.92■■□□□ 1.9
TDP1-206ENST00000553569 CHMP4CQ96CF2 233 aa26.92■■□□□ 1.9
TDP1-206ENST00000553569 TRIM47Q96LD4 638 aa26.92■■□□□ 1.9
TDP1-206ENST00000553569 FCGRTP55899 365 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 ZKSCAN3Q9BRR0 538 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 KRT23Q9C075 422 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 CNNM2Q9H8M5 875 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 MORF4L1Q9UBU8 362 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 ISY1Q9ULR0 285 aaKnown RBP26.91■■□□□ 1.9
TDP1-206ENST00000553569 SYNPO2Q9UMS6 1093 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 TAF6LQ9Y6J9 622 aa26.91■■□□□ 1.9
TDP1-206ENST00000553569 COG2Q14746 738 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 PKN2Q16513 984 aaKnown RBP26.9■■□□□ 1.9
TDP1-206ENST00000553569 SLFN13Q68D06 897 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 POTEEQ6S8J3 1075 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 GMCL1P1Q8NEA9 526 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 TCP11L1Q9NUJ3 509 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 FBXO28Q9NVF7 368 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 RBPJLQ9UBG7 517 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 MTMR7Q9Y216 660 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 A0A0G2JMZ2 1700 aa26.9■■□□□ 1.9
TDP1-206ENST00000553569 GPRC5AQ8NFJ5 357 aa26.89■■□□□ 1.9
TDP1-206ENST00000553569 CNMDO75829 334 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 ERVK-9P63128 1117 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 ERVK-24P63145 666 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 TRDNQ13061 729 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 FBXO46Q6PJ61 603 aaPredicted RBP26.88■■□□□ 1.89
TDP1-206ENST00000553569 LBX2Q6XYB7 198 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 ATG4CQ96DT6 458 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 HOXC10Q9NYD6 342 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 RABGAP1Q9Y3P9 1069 aa26.88■■□□□ 1.89
TDP1-206ENST00000553569 TNPO2O14787 897 aaKnown RBP26.87■■□□□ 1.89
TDP1-206ENST00000553569 TOP1P11387 765 aaKnown RBP26.87■■□□□ 1.89
TDP1-206ENST00000553569 DSG3P32926 999 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms