RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 IFNL3Q8IZI9 196 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 GCC1Q96CN9 775 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 FAM227BQ96M60 508 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 TANGO6Q9C0B7 1094 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 FBXO28Q9NVF7 368 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 PCDH10Q9P2E7 1040 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 SBK1Q52WX2 424 aa21.83■■□□□ 1.09
SHMT2-206ENST00000553529 SMC5Q8IY18 1101 aa21.83■■□□□ 1.09
SHMT2-206ENST00000553529 CHMP4CQ96CF2 233 aa21.83■■□□□ 1.09
SHMT2-206ENST00000553529 NUP88Q99567 741 aaPredicted RBP21.83■■□□□ 1.09
SHMT2-206ENST00000553529 STAP2Q9UGK3 403 aa21.83■■□□□ 1.09
SHMT2-206ENST00000553529 ROBO3Q96MS0 1386 aa21.83■■□□□ 1.08
SHMT2-206ENST00000553529 COL11A1P12107 1806 aaPredicted RBP21.83■■□□□ 1.08
SHMT2-206ENST00000553529 A0A0D9SFI3 127 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 ZFYP08048 801 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-206ENST00000553529 WDR78Q5VTH9 848 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 PXYLP1Q8TE99 480 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 U2AF1L4Q8WU68 220 aaKnown RBP21.82■■□□□ 1.08
SHMT2-206ENST00000553529 ATG4CQ96DT6 458 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 DDRGK1Q96HY6 314 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 DEFB118Q96PH6 123 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 TMX2Q9Y320 296 aa21.82■■□□□ 1.08
SHMT2-206ENST00000553529 PATL2C9JE40 543 aaKnown RBP21.81■■□□□ 1.08
SHMT2-206ENST00000553529 RAD21O60216 631 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 UBXN2AP68543 259 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 MORN1Q5T089 497 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 AMOTL1Q8IY63 956 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 USP6NLQ92738 828 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 VCPKMTQ9H867 229 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 FLRT1Q9NZU1 646 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 PDE4DIPQ5VU43 2346 aa21.81■■□□□ 1.08
SHMT2-206ENST00000553529 GJB1P08034 283 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 GJA8P48165 433 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 CTDSPL2Q05D32 466 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 FAM47AQ5JRC9 791 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 NKX2-3Q8TAU0 364 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 DIS3LQ8TF46 1054 aaKnown RBP21.8■■□□□ 1.08
SHMT2-206ENST00000553529 RABGAP1Q9Y3P9 1069 aa21.8■■□□□ 1.08
SHMT2-206ENST00000553529 RASGRP2Q7LDG7 609 aa21.79■■□□□ 1.08
SHMT2-206ENST00000553529 PLEKHH3Q7Z736 793 aa21.79■■□□□ 1.08
SHMT2-206ENST00000553529 ZNF589Q86UQ0 364 aaPredicted RBP21.79■■□□□ 1.08
SHMT2-206ENST00000553529 CCDC17Q96LX7 622 aa21.79■■□□□ 1.08
SHMT2-206ENST00000553529 MOV10L1Q9BXT6 1211 aaKnown RBP21.79■■□□□ 1.08
SHMT2-206ENST00000553529 ARHGEF10LQ9HCE6 1279 aa21.79■■□□□ 1.08
SHMT2-206ENST00000553529 FLOT1O75955 427 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 NMIQ13287 307 aaPredicted RBP21.78■■□□□ 1.08
SHMT2-206ENST00000553529 FAM83BQ5T0W9 1011 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 PRPF38BQ5VTL8 546 aaKnown RBP21.78■■□□□ 1.08
SHMT2-206ENST00000553529 LBX2Q6XYB7 198 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 UBE2Q1Q7Z7E8 422 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 CHD1LQ86WJ1 897 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 PLEKHM2Q8IWE5 1019 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 NPLOC4Q8TAT6 608 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.78■■□□□ 1.086e-7■□□□□ 8.9
SHMT2-206ENST00000553529 MKNK2Q9HBH9 465 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 PAK6Q9NQU5 681 aaPredicted RBP21.78■■□□□ 1.08
SHMT2-206ENST00000553529 ZBTB47Q9UFB7 747 aaPredicted RBP21.78■■□□□ 1.08
SHMT2-206ENST00000553529 MYH4Q9Y623 1939 aa21.78■■□□□ 1.08
SHMT2-206ENST00000553529 IGKV6D-41A0A0C4DH26 115 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 HMGCRP04035 888 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 MAPK4P31152 587 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 DSG3P32926 999 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 NUCB1Q02818 461 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 PPARAQ07869 468 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 COG2Q14746 738 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 GIMAP6Q6P9H5 292 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 LRRC47Q8N1G4 583 aaKnown RBP21.77■■□□□ 1.08
SHMT2-206ENST00000553529 EVI5LQ96CN4 794 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 NUDT12Q9BQG2 462 aa21.77■■□□□ 1.08
SHMT2-206ENST00000553529 RWDD1Q9H446 243 aaPredicted RBP21.77■■□□□ 1.08
SHMT2-206ENST00000553529 NMT2O60551 498 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 SGPL1O95470 568 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 PRKAR2AP13861 404 aaKnown RBP21.76■■□□□ 1.07
SHMT2-206ENST00000553529 GNAT2P19087 354 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 PDE4AP27815 886 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 CCND3P30281 292 aaPredicted RBP21.76■■□□□ 1.07
SHMT2-206ENST00000553529 PLS1Q14651 629 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 RILPL2Q969X0 211 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 CEP95Q96GE4 821 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 NAPBQ9H115 298 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 KANSL2Q9H9L4 492 aa21.76■■□□□ 1.07
SHMT2-206ENST00000553529 ALPK3Q96L96 1907 aa21.75■■□□□ 1.07
SHMT2-206ENST00000553529 TRIM6-TRIM34B2RNG4 842 aa21.75■■□□□ 1.07
SHMT2-206ENST00000553529 TMEM132BQ14DG7 1078 aa21.75■■□□□ 1.07
SHMT2-206ENST00000553529 CCAR1Q8IX12 1150 aaKnown RBP21.75■■□□□ 1.07
SHMT2-206ENST00000553529 SPATC1LQ9H0A9 340 aa21.75■■□□□ 1.07
SHMT2-206ENST00000553529 CLIP2Q9UDT6 1046 aa21.75■■□□□ 1.07
SHMT2-206ENST00000553529 NDUFB10O96000 172 aa21.74■■□□□ 1.07
SHMT2-206ENST00000553529 ERCC3P19447 782 aa21.74■■□□□ 1.07
SHMT2-206ENST00000553529 PTPREP23469 700 aa21.74■■□□□ 1.07
SHMT2-206ENST00000553529 CACNB2Q08289 660 aaPredicted RBP21.74■■□□□ 1.07
SHMT2-206ENST00000553529 GTF3C2Q8WUA4 911 aaPredicted RBP21.74■■□□□ 1.07
SHMT2-206ENST00000553529 SOCS4Q8WXH5 440 aa21.74■■□□□ 1.07
SHMT2-206ENST00000553529 CWC22Q9HCG8 908 aaKnown RBP21.74■■□□□ 1.07
SHMT2-206ENST00000553529 WDR46O15213 610 aaKnown RBP21.73■■□□□ 1.07
SHMT2-206ENST00000553529 FARP2O94887 1054 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-206ENST00000553529 TFRCP02786 760 aaKnown RBP21.73■■□□□ 1.07
SHMT2-206ENST00000553529 ZKSCAN1P17029 563 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-206ENST00000553529 MNX1P50219 401 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-206ENST00000553529 MAP2K5Q13163 448 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms