RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 ZFYVE27Q5T4F4 411 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 LETMD1Q6P1Q0 360 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 MPRIPQ6WCQ1 1025 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 TMEFF1Q8IYR6 380 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 RIN3Q8TB24 985 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 DHX38Q92620 1227 aaKnown RBP3.67□□□□□ -1.82
LIMA1-209ENST00000552008 COX4I2Q96KJ9 171 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 FAM129BQ96TA1 746 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 CNTD2Q9H8S5 307 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 CACNA2D2Q9NY47 1150 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 TRAK1Q9UPV9 953 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 GPR182O15218 404 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 CPNE3O75131 537 aaKnown RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 GADD45BO75293 160 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 SLPIP03973 132 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 P4HBP07237 508 aaKnown RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 ZNF16P17020 682 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 NME2P22392 152 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 CYP7A1P22680 504 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 TPP2P29144 1249 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 GDF5P43026 501 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 CHRNEQ04844 493 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 GAB4Q2WGN9 574 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 ADGRF1Q5T601 910 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 ALG1LQ6GMV1 187 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 DTHD1Q6ZMT9 781 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 FAM129CQ86XR2 697 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 SPPL2CQ8IUH8 684 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 MFSD2AQ8NA29 543 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 TP53I13Q8NBR0 393 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 PIWIL2Q8TC59 973 aaKnown RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 ZNF428Q96B54 188 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 ALKBH8Q96BT7 664 aaKnown RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 SHISA4Q96DD7 197 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 VWCEQ96DN2 955 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 MRRFQ96E11 262 aaKnown RBP3.66□□□□□ -1.82
LIMA1-209ENST00000552008 CBX8Q9HC52 389 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 NLRP2Q9NX02 1062 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 DUSP13Q9UII6 198 aa3.66□□□□□ -1.82
LIMA1-209ENST00000552008 EIF1AYO14602 144 aaKnown RBP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 PRPF40AO75400 957 aaKnown RBP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 KCNC1P48547 511 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 FMR1Q06787 632 aaKnown RBP eCLIP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 PSMD2Q13200 908 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 ORC1Q13415 861 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 SLBPQ14493 270 aaKnown RBP eCLIP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 SYTL4Q96C24 671 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 PWWP2AQ96N64 755 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 TRIT1Q9H3H1 467 aaKnown RBP3.65□□□□□ -1.83
LIMA1-209ENST00000552008 FBRSQ9HAH7 460 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 SMPD4Q9NXE4 827 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 PPP4R2Q9NY27 417 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 SPG7Q9UQ90 795 aa3.65□□□□□ -1.83
LIMA1-209ENST00000552008 C1QTNF3-AMACRE9PGA6 284 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 C6P13671 934 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 VIPR1P32241 457 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 CDR1P51861 262 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 GRM2Q14416 872 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 DSC3Q14574 896 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 ENOX2Q16206 610 aaKnown RBP3.64□□□□□ -1.83
LIMA1-209ENST00000552008 SIRT2Q8IXJ6 389 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 MZB1Q8WU39 189 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 ELMO3Q96BJ8 720 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 DUSP9Q99956 384 aaKnown RBP3.64□□□□□ -1.83
LIMA1-209ENST00000552008 DUSP15Q9H1R2 295 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-209ENST00000552008 VTI1BQ9UEU0 232 aa3.64□□□□□ -1.83
LIMA1-209ENST00000552008 CYR61O00622 381 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 SORBS3O60504 671 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 LTKP29376 864 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 CAP2P40123 477 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 FCGRTP55899 365 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 TAGLNQ01995 201 aaKnown RBP3.63□□□□□ -1.83
LIMA1-209ENST00000552008 NKG7Q16617 165 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 TSNAXIP1Q2TAA8 658 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 CPZQ66K79 652 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 FBXO33Q7Z6M2 555 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 FERMT3Q86UX7 667 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 LSRQ86X29 649 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-209ENST00000552008 ZFPM1Q8IX07 1006 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 ANKS4BQ8N8V4 417 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 FBF1Q8TES7 1133 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 CCDC74AQ96AQ1 378 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 PARP2Q9UGN5 583 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 WWC3Q9ULE0 1092 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 PCDHA4Q9UN74 947 aa3.63□□□□□ -1.83
LIMA1-209ENST00000552008 PRAMEF27A3QJZ7 478 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 TRIM37O94972 964 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 TACR2P21452 398 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 EIF4BP23588 611 aaKnown RBP3.62□□□□□ -1.83
LIMA1-209ENST00000552008 SLURP1P55000 103 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 DUSP4Q13115 394 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.62□□□□□ -1.83
LIMA1-209ENST00000552008 CDH24Q86UP0 819 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 GRIN3AQ8TCU5 1115 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 XAGE3Q8WTP9 111 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 FRMD6Q96NE9 622 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 USP40Q9NVE5 1235 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 GPATCH2Q9NW75 528 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 PCDHA11Q9Y5I1 949 aa3.62□□□□□ -1.83
LIMA1-209ENST00000552008 UNCXA6NJT0 531 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms