RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TACC1O75410 805 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 LMAN1P49257 510 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 GOLGA1Q92805 767 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 MROH1Q8NDA8 1641 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 FAM170AA1A519 330 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 SPECC1LQ69YQ0 1117 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 LRRC8AQ8IWT6 810 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 TBC1D22AQ8WUA7 517 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 CTNNBL1Q8WYA6 563 aaPredicted RBP18.27■□□□□ 0.52
CUX1-213ENST00000549414 CALCRLQ16602 461 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 NELFCDQ8IXH7 590 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 BICD1Q96G01 975 aa18.27■□□□□ 0.52
CUX1-213ENST00000549414 FMNL1O95466 1100 aaPredicted RBP18.27■□□□□ 0.51
CUX1-213ENST00000549414 TECP42680 631 aa18.27■□□□□ 0.51
CUX1-213ENST00000549414 SLF1Q9BQI6 1058 aa18.27■□□□□ 0.51
CUX1-213ENST00000549414 SRRTQ9BXP5 876 aaKnown RBP18.27■□□□□ 0.51
CUX1-213ENST00000549414 ARHGAP6O43182 974 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 IFNAR1P17181 557 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 DHX37Q8IY37 1157 aaKnown RBP18.26■□□□□ 0.51
CUX1-213ENST00000549414 CELF1Q92879 486 aaKnown RBP18.26■□□□□ 0.51
CUX1-213ENST00000549414 ATP8A2Q9NTI2 1148 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 NEDD4P46934 1319 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 NEFHP12036 1026 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 PRDX5P30044 214 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 HERC4Q5GLZ8 1057 aaPredicted RBP18.26■□□□□ 0.51
CUX1-213ENST00000549414 KAZALD1Q96I82 304 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 PCDHB6Q9Y5E3 794 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 POTEB2H3BUK9 544 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 CTR9Q6PD62 1173 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 MRFAP1L1Q96HT8 127 aa18.26■□□□□ 0.51
CUX1-213ENST00000549414 A0A0G2JLW4 131 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 RDXP35241 583 aaKnown RBP18.25■□□□□ 0.51
CUX1-213ENST00000549414 MECOMQ03112 1051 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 RAPGEF1Q13905 1077 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 NCAPH2Q6IBW4 605 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 RBM6P78332 1123 aaKnown RBP18.25■□□□□ 0.51
CUX1-213ENST00000549414 TMEM87AQ8NBN3 555 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 ERO1AQ96HE7 468 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 BCL2L12Q9HB09 334 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 ARHGEF28Q8N1W1 1705 aaKnown RBP18.25■□□□□ 0.51
CUX1-213ENST00000549414 CCDC65Q8IXS2 484 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 MCM3P25205 808 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 MAEAQ7L5Y9 396 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 HS2ST1Q7LGA3 356 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 CPXCR1Q8N123 301 aa18.25■□□□□ 0.51
CUX1-213ENST00000549414 RNF26Q9BY78 433 aaPredicted RBP18.25■□□□□ 0.51
CUX1-213ENST00000549414 CYP2D6P10635 497 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 PPP4R3AQ6IN85 833 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 CFBP00751 764 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 CNNM4Q6P4Q7 775 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 TEKT1Q969V4 418 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 ZNF609O15014 1411 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 MMP1P03956 469 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 PPP2R3AQ06190 1150 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 FNBP4Q8N3X1 1017 aaPredicted RBP18.24■□□□□ 0.51
CUX1-213ENST00000549414 CEP112Q8N8E3 955 aa18.24■□□□□ 0.51
CUX1-213ENST00000549414 PLEKHA8P1O95397 391 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 IFFO1Q0D2I5 559 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 TRAF1Q13077 416 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 PKNOX2Q96KN3 472 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 PSMB7Q99436 277 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 KIAA0754O94854 1291 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 SERPINB2P05120 415 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 ATP2B4P23634 1241 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 LIFRP42702 1097 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 ARID5BQ14865 1188 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 CCDC174Q6PII3 467 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.23■□□□□ 0.51
CUX1-213ENST00000549414 CCDC94Q9BW85 323 aaPredicted RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 NAA15Q9BXJ9 866 aaKnown RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 XDHP47989 1333 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 USP17L3A6NCW0 530 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 USP17L4A6NCW7 530 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 TUBB4AP04350 444 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 KRT13P13646 458 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 USP17L1Q7RTZ2 530 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 FAM207AQ9NSI2 230 aaPredicted RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 DDX39AO00148 427 aaKnown RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 POTEJP0CG39 1038 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 ATP1A3P13637 1013 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 NF2P35240 595 aa18.23■□□□□ 0.51
CUX1-213ENST00000549414 CKAP4Q07065 602 aaKnown RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 FOXP1Q9H334 677 aaPredicted RBP18.23■□□□□ 0.51
CUX1-213ENST00000549414 DDAH1O94760 285 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 CLEC17AQ6ZS10 378 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 MB21D2Q8IYB1 491 aaPredicted RBP18.22■□□□□ 0.51
CUX1-213ENST00000549414 CDC27P30260 824 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 MAPK8IP2Q13387 824 aaPredicted RBP18.22■□□□□ 0.51
CUX1-213ENST00000549414 MAATS1Q7Z4T9 603 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 LZTS2Q9BRK4 669 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 ZNF215Q9UL58 517 aaPredicted RBP18.22■□□□□ 0.51
CUX1-213ENST00000549414 RIPOR2Q9Y4F9 1068 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 PPIP5K2O43314 1243 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 RNASE9P60153 205 aaKnown RBP18.22■□□□□ 0.51
CUX1-213ENST00000549414 DIP2BQ9P265 1576 aa18.22■□□□□ 0.51
CUX1-213ENST00000549414 USP42Q9H9J4 1324 aaKnown RBP18.22■□□□□ 0.51
CUX1-213ENST00000549414 EPSTI1Q96J88 318 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 GOLPH3LQ9H4A5 285 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 MINPP1Q9UNW1 487 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 PPP6R2O75170 966 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms