RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 ZNF446Q9NWS9 450 aa19.67■□□□□ 0.74
SPIDR-227ENST00000541342 FOCADQ5VW36 1801 aa19.67■□□□□ 0.74
SPIDR-227ENST00000541342 MARCKSP29966 332 aaPredicted RBP19.66■□□□□ 0.74
SPIDR-227ENST00000541342 DOK7Q18PE1 504 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 CCDC93Q567U6 631 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 ISM2Q6H9L7 571 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 CCDC150Q8NCX0 1101 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 FAM163AQ96GL9 167 aaPredicted RBP19.66■□□□□ 0.74
SPIDR-227ENST00000541342 GAKO14976 1311 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 ROBO3Q96MS0 1386 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 SLU7O95391 586 aaKnown RBP19.66■□□□□ 0.74
SPIDR-227ENST00000541342 PDE4BQ07343 736 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 CRACR2BQ8N4Y2 399 aaPredicted RBP19.66■□□□□ 0.74
SPIDR-227ENST00000541342 CERS5Q8N5B7 392 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 LMOD1P29536 600 aaPredicted RBP19.66■□□□□ 0.74
SPIDR-227ENST00000541342 PLCD1P51178 756 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 RHBDL3P58872 404 aa19.66■□□□□ 0.74
SPIDR-227ENST00000541342 SLC39A14Q15043 492 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 MXD3Q9BW11 206 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 PDGFDQ9GZP0 370 aaPredicted RBP19.65■□□□□ 0.74
SPIDR-227ENST00000541342 SAP30BPQ9UHR5 308 aaKnown RBP19.65■□□□□ 0.74
SPIDR-227ENST00000541342 PSDA5PKW4 1024 aaPredicted RBP19.65■□□□□ 0.74
SPIDR-227ENST00000541342 SFPQP23246 707 aaKnown RBP eCLIP19.65■□□□□ 0.74
SPIDR-227ENST00000541342 CHRNA5P30532 468 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 KCNJ6P48051 423 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 TROAPQ12815 778 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 STK32BQ9NY57 414 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 HPSEQ9Y251 543 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 ADAMTSL1Q8N6G6 1762 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 MYH1P12882 1939 aa19.65■□□□□ 0.74
SPIDR-227ENST00000541342 FANCGO15287 622 aa19.64■□□□□ 0.74
SPIDR-227ENST00000541342 SHC4Q6S5L8 630 aa19.64■□□□□ 0.74
SPIDR-227ENST00000541342 DPF2Q92785 391 aa19.64■□□□□ 0.74
SPIDR-227ENST00000541342 TUBE1Q9UJT0 475 aa19.64■□□□□ 0.74
SPIDR-227ENST00000541342 CCDC196A0A1B0GTZ2 297 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 SLFN14P0C7P3 912 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 SYT10Q6XYQ8 523 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 H0YIN7 160 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 KIF2AO00139 706 aaPredicted RBP19.64■□□□□ 0.73
SPIDR-227ENST00000541342 FANCCQ00597 558 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 PTPAQ15257 358 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 CATIPQ7Z7H3 387 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 TEX11Q8IYF3 940 aa19.64■□□□□ 0.73
SPIDR-227ENST00000541342 IKBKBO14920 756 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 ZRSR1Q15695 479 aaKnown RBP19.63■□□□□ 0.73
SPIDR-227ENST00000541342 STYK1Q6J9G0 422 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 RCSD1Q6JBY9 416 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 DAGLAQ9Y4D2 1042 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 FLT1P17948 1338 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 TSPY2A6NKD2 308 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 FUT2Q10981 343 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 SLC44A5Q8NCS7 719 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 IL17RBQ9NRM6 502 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 GABPB1Q06547 395 aaPredicted RBP19.63■□□□□ 0.73
SPIDR-227ENST00000541342 MAP3K14Q99558 947 aa19.63■□□□□ 0.73
SPIDR-227ENST00000541342 F8W031 263 aaPredicted RBP19.62■□□□□ 0.73
SPIDR-227ENST00000541342 PLEKHA8P1O95397 391 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 CERS3Q8IU89 383 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 TRIM22Q8IYM9 498 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 TFAP4Q01664 338 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 ERCC6LQ2NKX8 1250 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 TIGD1Q96MW7 591 aa19.62■□□□□ 0.73
SPIDR-227ENST00000541342 ZNF646O15015 1829 aaPredicted RBP19.62■□□□□ 0.73
SPIDR-227ENST00000541342 DEXIO95424 95 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 H2AFXP16104 143 aaPredicted RBP19.61■□□□□ 0.73
SPIDR-227ENST00000541342 PNOCQ13519 176 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 PPP2R5BQ15173 497 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 SLF2Q8IX21 1173 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 KCNQ5Q9NR82 932 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 SYKP43405 635 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 WASF1Q92558 559 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 SHISA4Q96DD7 197 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 TMX4Q9H1E5 349 aaPredicted RBP19.61■□□□□ 0.73
SPIDR-227ENST00000541342 ZNF219Q9P2Y4 722 aaPredicted RBP19.61■□□□□ 0.73
SPIDR-227ENST00000541342 SCN9AQ15858 1988 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 DDAH1O94760 285 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 TRIM29Q14134 588 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 PTPN21Q16825 1174 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 KRT222Q8N1A0 295 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 DBNDD1Q9H9R9 158 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 KCNJ14Q9UNX9 436 aa19.61■□□□□ 0.73
SPIDR-227ENST00000541342 FAM237AA0A1B0GTK4 181 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 PLCG2P16885 1265 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 DEFB132Q7Z7B7 95 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 FOXP4Q8IVH2 680 aaPredicted RBP19.6■□□□□ 0.73
SPIDR-227ENST00000541342 CLIC6Q96NY7 704 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.6■□□□□ 0.73
SPIDR-227ENST00000541342 TMX1Q9H3N1 280 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 SUGT1Q9Y2Z0 365 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 METTL16Q86W50 562 aaKnown RBP19.6■□□□□ 0.73
SPIDR-227ENST00000541342 AMOTL1Q8IY63 956 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 ST7Q9NRC1 585 aa19.6■□□□□ 0.73
SPIDR-227ENST00000541342 MMP1P03956 469 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 PKN1Q16512 942 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 TRIM65Q6PJ69 517 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 RNF26Q9BY78 433 aaPredicted RBP19.59■□□□□ 0.73
SPIDR-227ENST00000541342 MKNK2Q9HBH9 465 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 CALM1P0DP23 149 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 CALM2P0DP24 149 aa19.59■□□□□ 0.73
SPIDR-227ENST00000541342 CALM3P0DP25 149 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms