RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 TCP11L1Q9NUJ3 509 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 LRP5O75197 1615 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 PPEF1O14829 653 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 CCDC178Q5BJE1 867 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 SGMS1Q86VZ5 419 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 TXLNBQ8N3L3 684 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 ZSCAN10Q96SZ4 725 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 VPS18Q9P253 973 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 COL5A3P25940 1745 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 DDX60Q8IY21 1712 aaKnown RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 DDR1Q08345 913 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 MFSD14BQ5SR56 506 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 SLC51AQ86UW1 340 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 SLF2Q8IX21 1173 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 KLHL34Q8N239 644 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 BAG1Q99933 345 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 ARPP21Q9UBL0 812 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 SEC63Q9UGP8 760 aaKnown RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 SAP30BPQ9UHR5 308 aaKnown RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF215Q9UL58 517 aaPredicted RBP11.29□□□□□ -0.6
TRAF1-202ENST00000540010 NHSQ6T4R5 1651 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 AKAP11Q9UKA4 1901 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 MMP10P09238 476 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 USP8P40818 1118 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 RBM5P52756 815 aaKnown RBP eCLIP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 C10orf67Q8IYJ2 551 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 TGFBRAP1Q8WUH2 860 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 PLIN2Q99541 437 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 DCP1AQ9NPI6 582 aaPredicted RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 TMCO5BA8MYB1 307 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF202O95125 648 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 FANCCQ00597 558 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 DNAJC21Q5F1R6 531 aaKnown RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 TCERG1LQ5VWI1 586 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 FANCBQ8NB91 859 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 CD209Q9NNX6 404 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 MAPK8IP1Q9UQF2 711 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 THSD7AQ9UPZ6 1657 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 TRIM75PA6NK02 468 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 CYP2D6P10635 497 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 NOP2P46087 812 aaKnown RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 MAPKAPK5Q8IW41 473 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 FLAD1Q8NFF5 587 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 GOLGA1Q92805 767 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 SRRTQ9BXP5 876 aaKnown RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 USP17L8P0C7I0 530 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 CCT6AP40227 531 aaKnown RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 GTF2IP78347 998 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 ERCC6LQ2NKX8 1250 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 MYSM1Q5VVJ2 828 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 NKX2-3Q8TAU0 364 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 XPO4Q9C0E2 1151 aaKnown RBP11.28□□□□□ -0.6
TRAF1-202ENST00000540010 SALL1Q9NSC2 1324 aa11.28□□□□□ -0.6
TRAF1-202ENST00000540010 RREB1Q92766 1687 aa11.27□□□□□ -0.6
TRAF1-202ENST00000540010 CTAGE9A4FU28 777 aa11.27□□□□□ -0.6
TRAF1-202ENST00000540010 MPHOSPH10O00566 681 aaKnown RBP11.27□□□□□ -0.6
TRAF1-202ENST00000540010 ANO1Q5XXA6 986 aa11.27□□□□□ -0.6
TRAF1-202ENST00000540010 DPP8Q6V1X1 898 aaPredicted RBP11.27□□□□□ -0.6
TRAF1-202ENST00000540010 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.27□□□□□ -0.6
TRAF1-202ENST00000540010 TEX11Q8IYF3 940 aa11.27□□□□□ -0.6
TRAF1-202ENST00000540010 PGBD1Q96JS3 809 aa11.27□□□□□ -0.6
TRAF1-202ENST00000540010 C4BP0C0L5 1744 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 POTEB2H3BUK9 544 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 POLRMTO00411 1230 aaKnown RBP11.27□□□□□ -0.61
TRAF1-202ENST00000540010 ZNF76P36508 570 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 PPP2R3AQ06190 1150 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 CCDC96Q2M329 555 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 TDRD7Q8NHU6 1098 aaKnown RBP11.27□□□□□ -0.61
TRAF1-202ENST00000540010 CABP5Q9NP86 173 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 RCOR1Q9UKL0 485 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 TAF1P21675 1872 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 SMIM22K7EJ46 135 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 MCM3P25205 808 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 PDE6BP35913 854 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 KAT14Q9H8E8 782 aa11.27□□□□□ -0.61
TRAF1-202ENST00000540010 COL1A1P02452 1464 aaPredicted RBP11.27□□□□□ -0.61
TRAF1-202ENST00000540010 TCHHQ07283 1943 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 KIF23Q02241 960 aaPredicted RBP11.26□□□□□ -0.61
TRAF1-202ENST00000540010 PRPF4BQ13523 1007 aaKnown RBP11.26□□□□□ -0.61
TRAF1-202ENST00000540010 CCDC40Q4G0X9 1142 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 COL23A1Q86Y22 540 aaPredicted RBP11.26□□□□□ -0.61
TRAF1-202ENST00000540010 SH3RF3Q8TEJ3 882 aaPredicted RBP11.26□□□□□ -0.61
TRAF1-202ENST00000540010 ZNF287Q9HBT7 754 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 GOPCQ9HD26 462 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 KCNJ14Q9UNX9 436 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 CLIC4Q9Y696 253 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 MYH7P12883 1935 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 hCG_1642624A0A1W2PR95 340 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 ATP2C2O75185 946 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 DEXIO95424 95 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 TSPY3P0CV98 308 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 TSPY8P0CW00 308 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 CALM1P0DP23 149 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 CALM2P0DP24 149 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 CALM3P0DP25 149 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 PCP11498 1178 aaKnown RBP11.26□□□□□ -0.61
TRAF1-202ENST00000540010 IFNAR1P17181 557 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 ALDH1B1P30837 517 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 BTDP43251 543 aa11.26□□□□□ -0.61
TRAF1-202ENST00000540010 IFFO1Q0D2I5 559 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms