RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CAMTA1Q9Y6Y1 1673 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 LUC7L3O95232 432 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 HOXB7P09629 217 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 STK38Q15208 465 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 ATRIPQ8WXE1 791 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 RIN2Q8WYP3 895 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 SALL3Q9BXA9 1300 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 ABCD1P33897 745 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 CDCA2Q69YH5 1023 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 TLDC1Q6P9B6 456 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 IL17REQ8NFR9 667 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 MIPOL1Q8TD10 442 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 CCHCR1Q8TD31 782 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 DDX21Q9NR30 783 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 MAGEA8P43361 318 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 PIP4K2AP48426 406 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 USP14P54578 494 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 LRRC23Q53EV4 343 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 HHATQ5VTY9 493 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 TAX1BP1Q86VP1 789 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 CCDC85AQ96PX6 553 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 TSC22D3Q99576 134 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 GGA2Q9UJY4 613 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 MAP3K2Q9Y2U5 619 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 NCAPD2Q15021 1401 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 ERICH2A1L162 156 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 TARSL2A2RTX5 802 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 CCT2P78371 535 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 NKX1-1Q15270 411 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 SPECC1LQ69YQ0 1117 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 IL1RAPL2Q9NP60 686 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 TRPC6Q9Y210 931 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 SNX1Q13596 522 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 OR8K1Q8NGG5 319 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 CCDC97Q96F63 343 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 MYO1AQ9UBC5 1043 aa12.17□□□□□ -0.46
CLSTN3-207ENST00000537408 SH3TC1Q8TE82 1336 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 RTN3O95197 1032 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 ATP5JP18859 108 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 PDCLQ13371 301 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 SELENOOQ9BVL4 669 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 NARFQ9UHQ1 456 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 TPX2Q9ULW0 747 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 PPFIA3O75145 1194 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 KIF4AO95239 1232 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 ATP1A3P13637 1013 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 TTLL6Q8N841 843 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 ENGASEQ8NFI3 743 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 B4GALNT2Q8NHY0 566 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 EPN3Q9H201 632 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 RGL1Q9NZL6 768 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 AKR1B15C9JRZ8 316 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 FERP16591 822 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 SKOR1P84550 965 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 DBN1Q16643 649 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 ADCK5Q3MIX3 580 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 ARHGEF1Q92888 912 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 CAMKK2Q96RR4 588 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 PAGR1Q9BTK6 254 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 BAIAP2L1Q9UHR4 511 aa12.16□□□□□ -0.46
CLSTN3-207ENST00000537408 CHL1O00533 1208 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ST3GAL1Q11201 340 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 FUKQ8N0W3 1084 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 SLC35F6Q8N357 371 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 TBC1D31Q96DN5 1066 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 FANCLQ9NW38 375 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 A0A1W2PQ27 194 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 A0A1W2PQ64 194 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 A0A1W2PQD8 194 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 FESP07332 822 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 PAPOLAP51003 745 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ADKP55263 362 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 NAA35Q5VZE5 725 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ZNF473Q8WTR7 871 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ZC3H12CQ9C0D7 883 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 EHD4Q9H223 541 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 GRIN2DO15399 1336 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 NAA16Q6N069 864 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 GDAP1L1Q96MZ0 367 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ALS2CR12Q96Q35 445 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 IL25Q9H293 177 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 MRPL44Q9H9J2 332 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 TMOD2Q9NZR1 351 aa12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 CORO1CQ9ULV4 474 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-207ENST00000537408 ATP5J2-PTCD1G3V325 749 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 HIP1O00291 1037 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 MYO1EQ12965 1108 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 SPATA21Q7Z572 469 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 CCDC170Q8IYT3 715 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 RASSF8Q8NHQ8 419 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 NSMCE1Q8WV22 266 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 HEG1Q9ULI3 1381 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 A0A1B0GVL5 298 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 IMPDH2P12268 514 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 FOSBP53539 338 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 ATP8B2P98198 1209 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 IFIT5Q13325 482 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 CREB3L3Q68CJ9 461 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 CC2D2BQ6DHV5 1058 aa12.14□□□□□ -0.47
CLSTN3-207ENST00000537408 ADALQ6DHV7 355 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms