RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TPTE2Q6XPS3 522 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 TNFRSF25Q93038 417 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 SCG2P13521 617 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 ERCC5P28715 1186 aaPredicted RBP14.98□□□□□ -0.01
LDLR-203ENST00000535915 CASP1P29466 404 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 TXNRD3Q86VQ6 643 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 DZIP1Q86YF9 867 aaKnown RBP14.98□□□□□ -0.01
LDLR-203ENST00000535915 PAGE5Q96GU1 130 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 MED15Q96RN5 788 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 GTPBP4Q9BZE4 634 aaKnown RBP14.98□□□□□ -0.01
LDLR-203ENST00000535915 MCM9Q9NXL9 1143 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 BTAF1O14981 1849 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 NPHP1O15259 732 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 RPS6KA4O75676 772 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 ETF1P62495 437 aaKnown RBP14.97□□□□□ -0.01
LDLR-203ENST00000535915 TBX2Q13207 712 aaPredicted RBP14.97□□□□□ -0.01
LDLR-203ENST00000535915 KLHL10Q6JEL2 608 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 ARHGAP6O43182 974 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 SBK1Q52WX2 424 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 PIK3AP1Q6ZUJ8 805 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 BAG1Q99933 345 aaPredicted RBP14.97□□□□□ -0.01
LDLR-203ENST00000535915 L2HGDHQ9H9P8 463 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 DNAI1Q9UI46 699 aa14.97□□□□□ -0.01
LDLR-203ENST00000535915 ZSCAN12O43309 604 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 KIF20AO95235 890 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 ATP2C1P98194 919 aaPredicted RBP14.96□□□□□ -0.01
LDLR-203ENST00000535915 ELF2Q15723 593 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 SH3RF1Q7Z6J0 888 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 FCHSD1Q86WN1 690 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 TMEM139Q8IV31 216 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 FEZ1Q99689 392 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 SBF2Q86WG5 1849 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 USP17L8P0C7I0 530 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 ADKP55263 362 aaKnown RBP14.96□□□□□ -0.01
LDLR-203ENST00000535915 PIP4K2BP78356 416 aa14.96□□□□□ -0.01
LDLR-203ENST00000535915 PFKFB3Q16875 520 aaPredicted RBP14.96□□□□□ -0.01
LDLR-203ENST00000535915 RC3H1Q5TC82 1133 aaKnown RBP14.96□□□□□ -0.01
LDLR-203ENST00000535915 SYNRGQ9UMZ2 1314 aa14.96□□□□□ -0.02
LDLR-203ENST00000535915 KIF5BP33176 963 aa14.96□□□□□ -0.02
LDLR-203ENST00000535915 STX17P56962 302 aa14.96□□□□□ -0.02
LDLR-203ENST00000535915 SPTY2D1Q68D10 685 aaPredicted RBP14.96□□□□□ -0.02
LDLR-203ENST00000535915 REXO1L1PQ8IX06 675 aa14.96□□□□□ -0.02
LDLR-203ENST00000535915 KAT14Q9H8E8 782 aa14.96□□□□□ -0.02
LDLR-203ENST00000535915 PHLPP2Q6ZVD8 1323 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 VEGFAP15692 232 aaPredicted RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 CD44P16070 742 aaKnown RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 MCM7P33993 719 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 DPYDQ12882 1025 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 TC2NQ8N9U0 490 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 ZNF397Q8NF99 534 aaPredicted RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 STAMQ92783 540 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 GSDMAQ96QA5 445 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 PPP2R2CQ9Y2T4 447 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 USP5P45974 858 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 TFAP4Q01664 338 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 NR1I3Q14994 352 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 CT47A1Q5JQC4 288 aaPredicted RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 SPATA1Q5VX52 437 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 RCSD1Q6JBY9 416 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 SMYD4Q8IYR2 804 aaPredicted RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 ANKIB1Q9P2G1 1089 aa14.95□□□□□ -0.02
LDLR-203ENST00000535915 RTCBQ9Y3I0 505 aaKnown RBP14.95□□□□□ -0.02
LDLR-203ENST00000535915 MYH8P13535 1937 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 STX10O60499 249 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 TM4SF1P30408 202 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 TRAPPC10P48553 1259 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 CCDC93Q567U6 631 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 TRIM65Q6PJ69 517 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 TNRC6CQ9HCJ0 1690 aaKnown RBP14.94□□□□□ -0.02
LDLR-203ENST00000535915 A0A1B0GTH6 734 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 KMT5BQ4FZB7 885 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 TMED8Q6PL24 325 aaPredicted RBP14.94□□□□□ -0.02
LDLR-203ENST00000535915 FAM177A1Q8N128 213 aaPredicted RBP14.94□□□□□ -0.02
LDLR-203ENST00000535915 IQUBQ8NA54 791 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 C8orf37Q96NL8 207 aa14.94□□□□□ -0.02
LDLR-203ENST00000535915 CCNL1Q9UK58 526 aaPredicted RBP14.94□□□□□ -0.02
LDLR-203ENST00000535915 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.94□□□□□ -0.029e-9■■□□□ 11.4
LDLR-203ENST00000535915 ADAMTS3O15072 1205 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 LDHBP07195 334 aaKnown RBP14.93□□□□□ -0.02
LDLR-203ENST00000535915 CUL4BQ13620 913 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 NGLY1Q96IV0 654 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 OGFRQ9NZT2 677 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 LTBP4Q8N2S1 1624 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 NAV1Q8NEY1 1877 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 C12orf60Q5U649 245 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 PNMA1Q8ND90 353 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 ARHGEF1Q92888 912 aaKnown RBP14.93□□□□□ -0.02
LDLR-203ENST00000535915 DYNLL2Q96FJ2 89 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 BLZF1Q9H2G9 400 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 TAF1LQ8IZX4 1826 aa14.93□□□□□ -0.02
LDLR-203ENST00000535915 PPP1R3GB7ZBB8 358 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 TEX33O43247 280 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 CALML3P27482 149 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 ERCC6LQ2NKX8 1250 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 AMIGO3Q86WK7 504 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 LRRN4CLQ8ND94 238 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 GPKOWQ92917 476 aaPredicted RBP eCLIP14.92□□□□□ -0.027e-9■□□□□ 10.9
LDLR-203ENST00000535915 MKNK2Q9HBH9 465 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 IL17RBQ9NRM6 502 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 URI1O94763 535 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms