RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ZRANB2O95218 330 aaKnown RBP eCLIP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 FMNL1O95466 1100 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 SERPINC1P01008 464 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 IFNAR1P17181 557 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 GTF2E1P29083 439 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 IARSP41252 1262 aaKnown RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TBX2Q13207 712 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 SEMA3FQ13275 785 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 GNL2Q13823 731 aaKnown RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 ARID5BQ14865 1188 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 SART3Q15020 963 aaKnown RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 SAFBQ15424 915 aaKnown RBP eCLIP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 LRRC24Q50LG9 513 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TEX35Q5T0J7 233 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 KRT40Q6A162 431 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TMCO3Q6UWJ1 677 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 CLEC4GQ6UXB4 293 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF771Q7L3S4 317 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 AMIGO3Q86WK7 504 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 DZIP3Q86Y13 1208 aaKnown RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 HOMER1Q86YM7 354 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 NLGN1Q8N2Q7 840 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TMTC2Q8N394 836 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 GPR161Q8N6U8 529 aaKnown RBP7.23□□□□□ -1.25
SYNE1-233ENST00000535896 MNS1Q8NEH6 495 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 UBXN4Q92575 508 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 ARID3AQ99856 593 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 KRT23Q9C075 422 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 TSPYL1Q9H0U9 437 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 CALCOCO1Q9P1Z2 691 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 NDUFB9Q9Y6M9 179 aa7.23□□□□□ -1.25
SYNE1-233ENST00000535896 KIF28PB7ZC32 967 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CAMTA2O94983 1202 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 POLR3DP05423 398 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 PCP11498 1178 aaKnown RBP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 GYS1P13807 737 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF18P17022 549 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 POLD1P28340 1107 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 PIP4K2AP48426 406 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 GUCY1B3Q02153 619 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 FKBP4Q02790 459 aaKnown RBP eCLIP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 E2F4Q16254 413 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 NTRK3Q16288 839 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TMEM132AQ24JP5 1023 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CFAP100Q494V2 611 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TAF7LQ5H9L4 462 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 SPECC1LQ69YQ0 1117 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TTLL5Q6EMB2 1281 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TRIM65Q6PJ69 517 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 SHC4Q6S5L8 630 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 SYT10Q6XYQ8 523 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TTLL7Q6ZT98 887 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TMEM139Q8IV31 216 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 NOSTRINQ8IVI9 506 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TRIM22Q8IYM9 498 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 VGLL2Q8N8G2 317 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CNNM3Q8NE01 707 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 SPATA20Q8TB22 786 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF516Q92618 1163 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 RABGGTAQ92696 567 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CCDC51Q96ER9 411 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 PANX2Q96RD6 677 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CTAGE1Q96RT6 745 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 RNF41Q9H4P4 317 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 TRMT1Q9NXH9 659 aaKnown RBP7.22□□□□□ -1.25
SYNE1-233ENST00000535896 PODXL2Q9NZ53 605 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 KCNH3Q9ULD8 1083 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 RTL9Q8NET4 1388 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 DUOX1Q9NRD9 1551 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 ITIH6Q6UXX5 1313 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 UBN2Q6ZU65 1347 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 MROH5Q6ZUA9 1318 aa7.22□□□□□ -1.25
SYNE1-233ENST00000535896 CCDC151A5D8V7 595 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 GOLGA8AA7E2F4 631 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 DTNBO60941 627 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 WDHD1O75717 1129 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 DEXIO95424 95 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 MMP1P03956 469 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 CHGBP05060 677 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 PNMA6AP0CW24 399 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 XBP1P17861 261 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 FECHP22830 423 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 LMOD1P29536 600 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 ZAP70P43403 619 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 SARSP49591 514 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 PRSS12P56730 875 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 MDM2Q00987 491 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 SSRP1Q08945 709 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 GPS2Q13227 327 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 POSTNQ15063 836 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 ARHGAP29Q52LW3 1261 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 GIGYF2Q6Y7W6 1299 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 METTL16Q86W50 562 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 REXO1L1PQ8IX06 675 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 STAG1Q8WVM7 1258 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 BAG1Q99933 345 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 UBXN6Q9BZV1 441 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 PUS7LQ9H0K6 701 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 LY9Q9HBG7 655 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms