RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 PARD6AQ9NPB6 346 aa8.46□□□□□ -1.06
SYNE1-232ENST00000535081 RLBP1P12271 317 aa8.45□□□□□ -1.06
SYNE1-232ENST00000535081 CHRNEQ04844 493 aa8.45□□□□□ -1.06
SYNE1-232ENST00000535081 MEI1Q5TIA1 1274 aa8.45□□□□□ -1.06
SYNE1-232ENST00000535081 GPR160Q9UJ42 338 aa8.45□□□□□ -1.06
SYNE1-232ENST00000535081 TLR6Q9Y2C9 796 aa8.45□□□□□ -1.06
SYNE1-232ENST00000535081 TEX51A0A1B0GUA7 166 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 LRRN2O75325 713 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 PDE6BP35913 854 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 DUSP4Q13115 394 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 DIEXFQ68CQ4 756 aaKnown RBP8.44□□□□□ -1.06
SYNE1-232ENST00000535081 SPPL2CQ8IUH8 684 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 ANKS4BQ8N8V4 417 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 ZNF552Q9H707 407 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-232ENST00000535081 RNF19AQ9NV58 838 aa8.44□□□□□ -1.06
SYNE1-232ENST00000535081 CNOT6Q9ULM6 557 aaKnown RBP8.44□□□□□ -1.06
SYNE1-232ENST00000535081 TEKQ02763 1124 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 KCNA1Q09470 495 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 SNX17Q15036 470 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 TMEM201Q5SNT2 666 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 TMEM132EQ6IEE7 984 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 DUSP9Q99956 384 aaKnown RBP8.43□□□□□ -1.06
SYNE1-232ENST00000535081 ZCCHC4Q9H5U6 513 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 GCM1Q9NP62 436 aa8.43□□□□□ -1.06
SYNE1-232ENST00000535081 BMP7P18075 431 aa8.42□□□□□ -1.06
SYNE1-232ENST00000535081 SLFN12Q8IYM2 578 aa8.42□□□□□ -1.06
SYNE1-232ENST00000535081 EBF1Q9UH73 591 aa8.42□□□□□ -1.06
SYNE1-232ENST00000535081 RBM47A0AV96 593 aaKnown RBP8.41□□□□□ -1.06
SYNE1-232ENST00000535081 SHISA3A0PJX4 238 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 BPNT1O95861 308 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 TNNI2P48788 182 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 CCDC84Q86UT8 332 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-232ENST00000535081 PHC3Q8NDX5 983 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 RELTQ969Z4 430 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 KREMEN1Q96MU8 473 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 NOC4LQ9BVI4 516 aaKnown RBP8.41□□□□□ -1.06
SYNE1-232ENST00000535081 SGPP1Q9BX95 441 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 ASPNQ9BXN1 380 aa8.41□□□□□ -1.06
SYNE1-232ENST00000535081 RFXAPO00287 272 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 PSPNO60542 156 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 ZNF385BQ569K4 471 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 TCERG1LQ5VWI1 586 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 BNC2Q6ZN30 1099 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-232ENST00000535081 LINC01599Q8WXQ3 324 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 SHISA4Q96DD7 197 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 KCNC2Q96PR1 638 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 KCTD3Q9Y597 815 aa8.4□□□□□ -1.06
SYNE1-232ENST00000535081 A0A0G2JLL6 359 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-232ENST00000535081 CILPO75339 1184 aa8.39□□□□□ -1.07
SYNE1-232ENST00000535081 ST13P50502 369 aaKnown RBP8.39□□□□□ -1.07
SYNE1-232ENST00000535081 GALK1P51570 392 aa8.39□□□□□ -1.07
SYNE1-232ENST00000535081 CLEC16AQ2KHT3 1053 aa8.39□□□□□ -1.07
SYNE1-232ENST00000535081 OR14I1A6ND48 311 aa8.38□□□□□ -1.07
SYNE1-232ENST00000535081 TAF1CQ15572 869 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-232ENST00000535081 G6PC3Q9BUM1 346 aa8.38□□□□□ -1.07
SYNE1-232ENST00000535081 REV1Q9UBZ9 1251 aa8.38□□□□□ -1.07
SYNE1-232ENST00000535081 KLHL3Q9UH77 587 aa8.38□□□□□ -1.07
SYNE1-232ENST00000535081 PRR36Q9H6K5 1346 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 FAM221AA4D161 298 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 SSPNQ14714 243 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 TMEM151BQ8IW70 566 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 GATAD2BQ8WXI9 593 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 CCDC74BQ96LY2 380 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 ZNF281Q9Y2X9 895 aa8.37□□□□□ -1.07
SYNE1-232ENST00000535081 NOTOA8MTQ0 251 aa8.36□□□□□ -1.07
SYNE1-232ENST00000535081 TRIM13O60858 407 aa8.36□□□□□ -1.07
SYNE1-232ENST00000535081 EAPPQ56P03 285 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-232ENST00000535081 ADGRF1Q5T601 910 aa8.36□□□□□ -1.07
SYNE1-232ENST00000535081 NLRX1Q86UT6 975 aa8.36□□□□□ -1.07
SYNE1-232ENST00000535081 MARCH10Q8NA82 808 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-232ENST00000535081 CHURC1-FNTBB4DL54 471 aa8.35□□□□□ -1.07
SYNE1-232ENST00000535081 FOXD2O60548 495 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-232ENST00000535081 USP2O75604 605 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-232ENST00000535081 F13A1P00488 732 aa8.35□□□□□ -1.07
SYNE1-232ENST00000535081 LMNB2Q03252 620 aa8.35□□□□□ -1.07
SYNE1-232ENST00000535081 CAMK2GQ13555 558 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-232ENST00000535081 SIRT2Q8IXJ6 389 aa8.35□□□□□ -1.07
SYNE1-232ENST00000535081 PHACTR4Q8IZ21 702 aa8.35□□□□□ -1.07
SYNE1-232ENST00000535081 F6X3S4 739 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 HTR3BO95264 441 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 EFEMP2O95967 443 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 PI3P19957 117 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 NFIXQ14938 502 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 RNF111Q6ZNA4 994 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 ASCC2Q9H1I8 757 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-232ENST00000535081 PARP2Q9UGN5 583 aa8.34□□□□□ -1.07
SYNE1-232ENST00000535081 MBD1Q9UIS9 605 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-232ENST00000535081 POLR3KQ9Y2Y1 108 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-232ENST00000535081 HRKO00198 91 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 PF4P02776 101 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 RPL10P27635 214 aaKnown RBP8.33□□□□□ -1.08
SYNE1-232ENST00000535081 PSMD2Q13200 908 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 NMIQ13287 307 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-232ENST00000535081 ENOX1Q8TC92 643 aaKnown RBP8.33□□□□□ -1.08
SYNE1-232ENST00000535081 SYTL5Q8TDW5 730 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-232ENST00000535081 SIGLEC10Q96LC7 697 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 KIF2CQ99661 725 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 HDAC8Q9BY41 377 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 IRAK3Q9Y616 596 aa8.33□□□□□ -1.08
SYNE1-232ENST00000535081 GRIN3BO60391 1043 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms