RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 DEFB118Q96PH6 123 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 NUDT12Q9BQG2 462 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 LNPKQ9C0E8 428 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 MKNK2Q9HBH9 465 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 EPB41L4AQ9HCS5 686 aaPredicted RBP12.49□□□□□ -0.41
CAPN1-225ENST00000533704 GJD2Q9UKL4 321 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 RABGAP1Q9Y3P9 1069 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 SPDYE16A6NNV3 312 aaPredicted RBP12.48□□□□□ -0.41
CAPN1-225ENST00000533704 CNMDO75829 334 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 TFRCP02786 760 aaKnown RBP12.48□□□□□ -0.41
CAPN1-225ENST00000533704 HMGCRP04035 888 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 EEF2P13639 858 aaKnown RBP12.48□□□□□ -0.41
CAPN1-225ENST00000533704 GJA8P48165 433 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 TRIM32Q13049 653 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 SBK1Q52WX2 424 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 GIMAP6Q6P9H5 292 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 GPR142Q7Z601 462 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 U2AF1L4Q8WU68 220 aaKnown RBP12.48□□□□□ -0.41
CAPN1-225ENST00000533704 SOCS4Q8WXH5 440 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 NACAP1Q9BZK3 213 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 VCPKMTQ9H867 229 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 BTBD7Q9P203 1132 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 A0A0G2JMZ2 1700 aa12.48□□□□□ -0.41
CAPN1-225ENST00000533704 SALL3Q9BXA9 1300 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 PRDM1O75626 825 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 FLOT1O75955 427 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 FARP2O94887 1054 aaPredicted RBP12.47□□□□□ -0.41
CAPN1-225ENST00000533704 SGPL1O95470 568 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 ZKSCAN1P17029 563 aaPredicted RBP12.47□□□□□ -0.41
CAPN1-225ENST00000533704 RGS2P41220 211 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 PDE1AP54750 535 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 PLS1Q14651 629 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 COG2Q14746 738 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 CCDC129Q6ZRS4 1044 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 SIAH1Q8IUQ4 282 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 IFNL3Q8IZI9 196 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 TRIB2Q92519 343 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 LPAR1Q92633 364 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.47□□□□□ -0.41
CAPN1-225ENST00000533704 RWDD1Q9H446 243 aaPredicted RBP12.47□□□□□ -0.41
CAPN1-225ENST00000533704 KANSL2Q9H9L4 492 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 TMX2Q9Y320 296 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 IVNS1ABPQ9Y6Y0 642 aa12.47□□□□□ -0.41
CAPN1-225ENST00000533704 PATL2C9JE40 543 aaKnown RBP12.46□□□□□ -0.41
CAPN1-225ENST00000533704 RASA1P20936 1047 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 AAMPQ13685 434 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 CCL14Q16627 93 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 ZMYM1Q5SVZ6 1142 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 DPF3Q92784 378 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 NAPBQ9H115 298 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 GOPCQ9HD26 462 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 HMX1Q9NP08 348 aaPredicted RBP12.46□□□□□ -0.41
CAPN1-225ENST00000533704 HOXC10Q9NYD6 342 aa12.46□□□□□ -0.41
CAPN1-225ENST00000533704 SUPT16HQ9Y5B9 1047 aaKnown RBP12.46□□□□□ -0.41
CAPN1-225ENST00000533704 ROBO3Q96MS0 1386 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 TRIM6-TRIM34B2RNG4 842 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 WDR46O15213 610 aaKnown RBP12.45□□□□□ -0.42
CAPN1-225ENST00000533704 PRKAR2AP13861 404 aaKnown RBP12.45□□□□□ -0.42
CAPN1-225ENST00000533704 MAP2K5Q13163 448 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 MORN1Q5T089 497 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 LBX2Q6XYB7 198 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 ZNF444Q8N0Y2 327 aaPredicted RBP12.45□□□□□ -0.42
CAPN1-225ENST00000533704 EVI5LQ96CN4 794 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 ATG4CQ96DT6 458 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 APBA2Q99767 749 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 ZNF287Q9HBT7 754 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 PAK6Q9NQU5 681 aaPredicted RBP12.45□□□□□ -0.42
CAPN1-225ENST00000533704 STAP2Q9UGK3 403 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 FRMPD3Q5JV73 1810 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 BRCA2P51587 3418 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 ALPK3Q96L96 1907 aa12.45□□□□□ -0.42
CAPN1-225ENST00000533704 PLXNA1Q9UIW2 1896 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 RPTORQ8N122 1335 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 IGHDP01880 384 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 SLC3A2P08195 630 aaKnown RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 DSG3P32926 999 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 IRX6P78412 446 aaPredicted RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 FAM83BQ5T0W9 1011 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 NCAPG2Q86XI2 1143 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 TRMT44Q8IYL2 757 aaKnown RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 RILPL2Q969X0 211 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 NUP88Q99567 741 aaPredicted RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 MOV10L1Q9BXT6 1211 aaKnown RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 SPATC1LQ9H0A9 340 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 FBXO28Q9NVF7 368 aa12.44□□□□□ -0.42
CAPN1-225ENST00000533704 ISY1Q9ULR0 285 aaKnown RBP12.44□□□□□ -0.42
CAPN1-225ENST00000533704 SLC15A5A6NIM6 579 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 XRCC5P13010 732 aaKnown RBP12.43□□□□□ -0.42
CAPN1-225ENST00000533704 ERCC3P19447 782 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 PTPREP23469 700 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 PDE4BQ07343 736 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 PPARAQ07869 468 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 CACNB2Q08289 660 aaPredicted RBP12.43□□□□□ -0.42
CAPN1-225ENST00000533704 FAM47AQ5JRC9 791 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 SMC5Q8IY18 1101 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 MB21D1Q8N884 522 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 USP6NLQ92738 828 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 CHMP4CQ96CF2 233 aa12.43□□□□□ -0.42
CAPN1-225ENST00000533704 HTATIP2Q9BUP3 242 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms