RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 DLK2Q6UY11 383 aa18.58■□□□□ 0.56
TRIM3-213ENST00000533309 ORC3Q9UBD5 711 aaPredicted RBP18.58■□□□□ 0.56
TRIM3-213ENST00000533309 MAD2L2Q9UI95 211 aa18.58■□□□□ 0.56
TRIM3-213ENST00000533309 STX6O43752 255 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 FMNL1O95466 1100 aaPredicted RBP18.57■□□□□ 0.56
TRIM3-213ENST00000533309 SNHG28P0DPA3 235 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 LARP1BQ659C4 914 aaKnown RBP18.57■□□□□ 0.56
TRIM3-213ENST00000533309 SULF1Q8IWU6 871 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 STAG2Q8N3U4 1231 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.57■□□□□ 0.56
TRIM3-213ENST00000533309 PHIPQ8WWQ0 1821 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 CNTNAP5Q8WYK1 1306 aa18.57■□□□□ 0.56
TRIM3-213ENST00000533309 PALM3A6NDB9 673 aaPredicted RBP18.56■□□□□ 0.56
TRIM3-213ENST00000533309 UBE2Q2LH0YL09 131 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 PDHBP11177 359 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 PDCP20941 246 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 KIF5BP33176 963 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 ATP2B2Q01814 1243 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 DCAF15Q66K64 600 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 SRBD1Q8N5C6 995 aaKnown RBP18.56■□□□□ 0.56
TRIM3-213ENST00000533309 FAM184AQ8NB25 1140 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 HOOK2Q96ED9 719 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 ZNF341Q9BYN7 854 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 ZNF112Q9UJU3 913 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 MTMR7Q9Y216 660 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 MTMR6Q9Y217 621 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 A0A1W2PRG0 241 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 USP17L5A8MUK1 530 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 SLC35G1Q2M3R5 365 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 KRT26Q7Z3Y9 468 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 CCDC82Q8N4S0 544 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 SLC26A6Q9BXS9 759 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 FZD1Q9UP38 647 aa18.56■□□□□ 0.56
TRIM3-213ENST00000533309 WDR33Q9C0J8 1336 aaKnown RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 ASNSP08243 561 aa18.55■□□□□ 0.56
TRIM3-213ENST00000533309 INPP5BP32019 993 aa18.55■□□□□ 0.56
TRIM3-213ENST00000533309 SSRP1Q08945 709 aaKnown RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 EAPPQ56P03 285 aaPredicted RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 USP17L2Q6R6M4 530 aa18.55■□□□□ 0.56
TRIM3-213ENST00000533309 PNMA8AQ86V59 439 aaPredicted RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 TNPO1Q92973 898 aaKnown RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 AIFM3Q96NN9 605 aa18.55■□□□□ 0.56
TRIM3-213ENST00000533309 RNF26Q9BY78 433 aaPredicted RBP18.55■□□□□ 0.56
TRIM3-213ENST00000533309 KIF3AQ9Y496 699 aa18.55■□□□□ 0.56
TRIM3-213ENST00000533309 TCHHQ07283 1943 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 CTNND1O60716 968 aaKnown RBP18.54■□□□□ 0.56
TRIM3-213ENST00000533309 POTEIP0CG38 1075 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 POTEJP0CG39 1038 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 GOLGA8HP0CJ92 632 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 SUPT20HL1Q3ZLR7 823 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 CDC37L1Q7L3B6 337 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 SYNPO2Q9UMS6 1093 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 MYH15Q9Y2K3 1946 aa18.54■□□□□ 0.56
TRIM3-213ENST00000533309 VPS37CA5D8V6 355 aaPredicted RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 PARP1P09874 1014 aaKnown RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 ZSCAN22P10073 491 aaPredicted RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 FOXD4L5Q5VV16 416 aaPredicted RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 CCDC84Q86UT8 332 aaPredicted RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 ACER1Q8TDN7 264 aa18.53■□□□□ 0.56
TRIM3-213ENST00000533309 FOXD4L4Q8WXT5 416 aaPredicted RBP18.53■□□□□ 0.56
TRIM3-213ENST00000533309 KLRG1Q96E93 195 aa18.53■□□□□ 0.56
TRIM3-213ENST00000533309 GINM1Q9NU53 330 aa18.53■□□□□ 0.56
TRIM3-213ENST00000533309 DCAF8L1A6NGE4 600 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 CYTH3O43739 400 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 PDIA4P13667 645 aaKnown RBP18.52■□□□□ 0.56
TRIM3-213ENST00000533309 ECE1P42892 770 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 GNAQP50148 359 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 FOSBP53539 338 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 ZNF543Q08ER8 600 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 ASPRV1Q53RT3 343 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 USP48Q86UV5 1035 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 TRIM22Q8IYM9 498 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 GMCL1P1Q8NEA9 526 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 WRNIP1Q96S55 665 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 GJB4Q9NTQ9 266 aa18.52■□□□□ 0.56
TRIM3-213ENST00000533309 KLRF2D3W0D1 207 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 PRPF3O43395 683 aaKnown RBP18.52■□□□□ 0.55
TRIM3-213ENST00000533309 DEXIO95424 95 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 PKN1Q16512 942 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 CDCA5Q96FF9 252 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 ALG1Q9BT22 464 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 GLIS2Q9BZE0 524 aaPredicted RBP18.52■□□□□ 0.55
TRIM3-213ENST00000533309 CPVLQ9H3G5 476 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 ARHGEF10LQ9HCE6 1279 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 TMX2Q9Y320 296 aa18.52■□□□□ 0.55
TRIM3-213ENST00000533309 FRMPD2Q68DX3 1309 aaPredicted RBP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 hCG_1642624A0A1W2PR95 340 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 F5H6K3 240 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 USP2O75604 605 aaPredicted RBP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 F13A1P00488 732 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 VEGFAP15692 232 aaPredicted RBP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 KLRC3Q07444 240 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 SCYL3Q8IZE3 742 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 ZKSCAN4Q969J2 545 aaPredicted RBP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 LZTS2Q9BRK4 669 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 SPZ1Q9BXG8 430 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 RRAGCQ9HB90 399 aa18.51■□□□□ 0.55
TRIM3-213ENST00000533309 V9GY48 417 aaPredicted RBP18.51■□□□□ 0.55
TRIM3-213ENST00000533309 NDUFB10O96000 172 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms