RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 SERTAD1Q9UHV2 236 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 PCDHA4Q9UN74 947 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 PSMA7O14818 248 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 CCNT1O60563 726 aaKnown RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 PTGS1P23219 599 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 PTGDRQ13258 359 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 PTPN14Q15678 1187 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 LRRC47Q8N1G4 583 aaKnown RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 CCDC112Q8NEF3 446 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 ERMNQ8TAM6 284 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 NMT2O60551 498 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 CLSTN1O94985 981 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 IDEP14735 1019 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 TNIP1Q15025 636 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 GRIPAP1Q4V328 841 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 CCDC93Q567U6 631 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 ADGRA1Q86SQ6 560 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 SH3GLB2Q9NR46 395 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 SALL1Q9NSC2 1324 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 SIPA1L3O60292 1781 aaPredicted RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 PNOCQ13519 176 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 TSG101Q99816 390 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 RRAGDQ9NQL2 400 aaPredicted RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 LRRC4BQ9NT99 713 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 ZSCAN12O43309 604 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 SKILP12757 684 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 U2AF2P26368 475 aaKnown RBP eCLIP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 PFKFB3Q16875 520 aaPredicted RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 TMEM47Q9BQJ4 181 aa12.59□□□□□ -0.39
TRIM3-211ENST00000532542 SRPRBQ9Y5M8 271 aaKnown RBP12.59□□□□□ -0.39
TRIM3-211ENST00000532542 hCG_1984214I3L0E3 225 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 TTLL6Q8N841 843 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 ZNF713Q8N859 430 aaPredicted RBP12.58□□□□□ -0.4
TRIM3-211ENST00000532542 TRIML1Q8N9V2 468 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 PI4KBQ9UBF8 816 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 GPR75-ASB3A0A0A6YYF3 556 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 KIF28PB7ZC32 967 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 ASIC1P78348 528 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 FAM114A1Q8IWE2 563 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 RTKN2Q8IZC4 609 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 SLC44A5Q8NCS7 719 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 NEDD1Q8NHV4 660 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 PCDHB6Q9Y5E3 794 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 CRKP46108 304 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 WWC2Q6AWC2 1192 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 FMR1NBQ8N0W7 255 aaPredicted RBP12.58□□□□□ -0.4
TRIM3-211ENST00000532542 MNS1Q8NEH6 495 aa12.58□□□□□ -0.4
TRIM3-211ENST00000532542 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
TRIM3-211ENST00000532542 PLSCR1O15162 318 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 HOXA10P31260 410 aaPredicted RBP12.57□□□□□ -0.4
TRIM3-211ENST00000532542 INF2Q27J81 1249 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 COL23A1Q86Y22 540 aaPredicted RBP12.57□□□□□ -0.4
TRIM3-211ENST00000532542 TRIM47Q96LD4 638 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 CSRNP2Q9H175 543 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 KANSL2Q9H9L4 492 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 FRMPD2Q68DX3 1309 aaPredicted RBP12.57□□□□□ -0.4
TRIM3-211ENST00000532542 N4BP3O15049 544 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 PTPREP23469 700 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 LONP1P36776 959 aaKnown RBP12.57□□□□□ -0.4
TRIM3-211ENST00000532542 ICA1Q05084 483 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 GRM4Q14833 912 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 UBA5Q9GZZ9 404 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 DAGLAQ9Y4D2 1042 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 FKBP15Q5T1M5 1219 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 NEK8Q86SG6 692 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 TANGO6Q9C0B7 1094 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 LAD1O00515 517 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 HSP90AA4PQ58FG1 418 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 GOLPH3LQ9H4A5 285 aa12.57□□□□□ -0.4
TRIM3-211ENST00000532542 FLT1P17948 1338 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 GUCY1A2P33402 732 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 RESP18Q5W5W9 173 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 USP17L2Q6R6M4 530 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 FOXP4Q8IVH2 680 aaPredicted RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 ZNF579Q8NAF0 562 aaKnown RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 PODXL2Q9NZ53 605 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 PCDHA5Q9Y5H7 936 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 SPEF2Q9C093 1822 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 UQCRHLA0A096LP55 91 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 ECE2O60344 883 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 UQCRHP07919 91 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 PPP1R2P41236 205 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 FANCCQ00597 558 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 ABCB5Q2M3G0 1257 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 C15orf52Q6ZUT6 534 aaKnown RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 MRFAP1L1Q96HT8 127 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 POLLQ9UGP5 575 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 SRGNP10124 158 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 TNNT1P13805 278 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 IL1R1P14778 569 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 COL9A3Q14050 684 aaPredicted RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 CCAR2Q8N163 923 aaKnown RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 SYMPKQ92797 1274 aaKnown RBP12.56□□□□□ -0.4
TRIM3-211ENST00000532542 IMPACTQ9P2X3 320 aa12.56□□□□□ -0.4
TRIM3-211ENST00000532542 OFD1O75665 1012 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 TXKP42681 527 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 STX17P56962 302 aa12.55□□□□□ -0.4
TRIM3-211ENST00000532542 EN1Q05925 392 aaPredicted RBP12.55□□□□□ -0.4
TRIM3-211ENST00000532542 SLFN13Q68D06 897 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms