RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	SH3TC2	Q8TF17	1288 aa		27.36	■■□□□ 1.97
CAPN1-222	ENST00000532285	RLF	Q13129	1914 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	GRK4	P32298	578 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	FLT3LG	P49771	235 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	MFAP1	P55081	439 aa	Known RBP	27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	ERVK-9	P63128	1117 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	ERVK-24	P63145	666 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	MLLT1	Q03111	559 aa	Predicted RBP	27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	LBX2	Q6XYB7	198 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	PAGR1	Q9BTK6	254 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	RABGAP1	Q9Y3P9	1069 aa		27.35	■■□□□ 1.97
CAPN1-222	ENST00000532285	HIP1	O00291	1037 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	PRDM1	O75626	825 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	KIAA1755	Q5JYT7	1200 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	POTEE	Q6S8J3	1075 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	TANGO6	Q9C0B7	1094 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	HOXC10	Q9NYD6	342 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	PARP14	Q460N5	1801 aa		27.34	■■□□□ 1.97
CAPN1-222	ENST00000532285	PEX10	O60683	326 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	IRF5	Q13568	498 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	COG2	Q14746	738 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	ZNF589	Q86UQ0	364 aa	Predicted RBP	27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	SLAIN1	Q8ND83	568 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	TMEM106C	Q9BVX2	250 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	GOPC	Q9HD26	462 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	NYAP2	Q9P242	653 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	CCDC171	Q6TFL3	1326 aa		27.33	■■□□□ 1.97
CAPN1-222	ENST00000532285	PLXNB2	O15031	1838 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	SPDYE16	A6NNV3	312 aa	Predicted RBP	27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	HSPD1	P10809	573 aa	Known RBP	27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	MAPK4	P31152	587 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285		Q3C1V9	767 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	SPICE1	Q8N0Z3	855 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	DIAPH3	Q9NSV4	1193 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	ANAPC4	Q9UJX5	808 aa		27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	KIAA0100	Q14667	2235 aa	Known RBP	27.32	■■□□□ 1.96
CAPN1-222	ENST00000532285	WDR46	O15213	610 aa	Known RBP	27.31	■■□□□ 1.96
CAPN1-222	ENST00000532285	ADCY3	O60266	1144 aa		27.31	■■□□□ 1.96
CAPN1-222	ENST00000532285	CCNA1	P78396	465 aa		27.31	■■□□□ 1.96
CAPN1-222	ENST00000532285	CCAR1	Q8IX12	1150 aa	Known RBP	27.31	■■□□□ 1.96
CAPN1-222	ENST00000532285	PXYLP1	Q8TE99	480 aa		27.31	■■□□□ 1.96
CAPN1-222	ENST00000532285	IGKV6D-41	A0A0C4DH26	115 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	CNMD	O75829	334 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	FGA	P02671	866 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	TSPY3	P0CV98	308 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	TSPY8	P0CW00	308 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	CTDSPL2	Q05D32	466 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	TTC22	Q5TAA0	569 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	BIN2	Q9UBW5	565 aa	Predicted RBP	27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	ZMYM6	O95789	1325 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	PLIN4	Q96Q06	1357 aa		27.3	■■□□□ 1.96
CAPN1-222	ENST00000532285	CWC27	Q6UX04	472 aa	Known RBP	27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285	NEDD1	Q8NHV4	660 aa		27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285	MTMR4	Q9NYA4	1195 aa		27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285	CLIP2	Q9UDT6	1046 aa		27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285	GJD2	Q9UKL4	321 aa		27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285		A0A0G2JMZ2	1700 aa		27.29	■■□□□ 1.96
CAPN1-222	ENST00000532285	POTEF	A5A3E0	1075 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	FLOT1	O75955	427 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	UBXN2A	P68543	259 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	TFAP4	Q01664	338 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	FAM47A	Q5JRC9	791 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	CEP95	Q96GE4	821 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	PORCN	Q9H237	461 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	BTBD7	Q9P203	1132 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	TNRC18	O15417	2968 aa	Predicted RBP	27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	BRCA2	P51587	3418 aa		27.28	■■□□□ 1.96
CAPN1-222	ENST00000532285	COL11A1	P12107	1806 aa	Predicted RBP	27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	RAD21	O60216	631 aa		27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	DSG3	P32926	999 aa		27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	MB21D1	Q8N884	522 aa		27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	MKL1	Q969V6	931 aa		27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	SYNPO2	Q9UMS6	1093 aa		27.27	■■□□□ 1.96
CAPN1-222	ENST00000532285	TTLL1	O95922	423 aa		27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	MYC	P01106	439 aa	Predicted RBP	27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	GSPT1	P15170	499 aa	Known RBP	27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	PLEKHH3	Q7Z736	793 aa		27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	NUDT12	Q9BQG2	462 aa		27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	CWC22	Q9HCG8	908 aa	Known RBP	27.26	■■□□□ 1.95
CAPN1-222	ENST00000532285	ELN	P15502	786 aa		27.25	■■□□□ 1.95
CAPN1-222	ENST00000532285	PPP4R3B	Q5MIZ7	849 aa		27.25	■■□□□ 1.95
CAPN1-222	ENST00000532285	GPR142	Q7Z601	462 aa		27.25	■■□□□ 1.95
CAPN1-222	ENST00000532285	SOCS4	Q8WXH5	440 aa		27.25	■■□□□ 1.95
CAPN1-222	ENST00000532285	INCENP	Q9NQS7	918 aa		27.25	■■□□□ 1.95
CAPN1-222	ENST00000532285	TSPY2	A6NKD2	308 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285		F5H6K3	240 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	ORC4	O43929	436 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	FGR	P09769	529 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	KLRC3	Q07444	240 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	MTFR1	Q15390	333 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	LAMA4	Q16363	1823 aa		27.24	■■□□□ 1.95
CAPN1-222	ENST00000532285	FAM83B	Q5T0W9	1011 aa		27.23	■■□□□ 1.95
CAPN1-222	ENST00000532285	ATG4C	Q96DT6	458 aa		27.23	■■□□□ 1.95
CAPN1-222	ENST00000532285	TACC3	Q9Y6A5	838 aa		27.23	■■□□□ 1.95
CAPN1-222	ENST00000532285	RANBP6	O60518	1105 aa	Known RBP	27.22	■■□□□ 1.95
CAPN1-222	ENST00000532285	NDUFB10	O96000	172 aa		27.22	■■□□□ 1.95
CAPN1-222	ENST00000532285	INHA	P05111	366 aa		27.22	■■□□□ 1.95
CAPN1-222	ENST00000532285	CCL5	P13501	91 aa		27.22	■■□□□ 1.95
CAPN1-222	ENST00000532285	EN2	P19622	333 aa	Predicted RBP	27.22	■■□□□ 1.95

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms