RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RBL2Q08999 1139 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 KARSQ15046 597 aaKnown RBP21.88■■□□□ 1.09
VPS28-213ENST00000530983 CTR9Q6PD62 1173 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 IGSF22Q8N9C0 903 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 CDCA7Q9BWT1 371 aaPredicted RBP21.88■■□□□ 1.09
VPS28-213ENST00000530983 EPC1Q9H2F5 836 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 BAZ2BQ9UIF8 2168 aaKnown RBP21.88■■□□□ 1.09
VPS28-213ENST00000530983 CNTNAP5Q8WYK1 1306 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 MYH13Q9UKX3 1938 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 TPM1P09493 284 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 CALM1P0DP23 149 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 CALM2P0DP24 149 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 CALM3P0DP25 149 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 PLA2G4AP47712 749 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 TTC38Q5R3I4 469 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 C3orf67Q6ZVT6 689 aa21.88■■□□□ 1.09
VPS28-213ENST00000530983 CCDC66A2RUB6 948 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 ATP2C1P98194 919 aaPredicted RBP21.87■■□□□ 1.09
VPS28-213ENST00000530983 EVX2Q03828 476 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 PPP2R3AQ06190 1150 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 UBE4AQ14139 1066 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 RAD9BQ6WBX8 426 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 CREBRFQ8IUR6 639 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 ACSBG1Q96GR2 724 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 BRMS1Q9HCU9 246 aa21.87■■□□□ 1.09
VPS28-213ENST00000530983 DDAH1O94760 285 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 CCDC175P0C221 793 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 PTGDRQ13258 359 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 RSRC2Q7L4I2 434 aaKnown RBP21.86■■□□□ 1.09
VPS28-213ENST00000530983 IRX2Q9BZI1 471 aaPredicted RBP21.86■■□□□ 1.09
VPS28-213ENST00000530983 XDHP47989 1333 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 KDM4FA0A1W2PPD8 638 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 PCP11498 1178 aaKnown RBP21.86■■□□□ 1.09
VPS28-213ENST00000530983 ANKRD18AQ8IVF6 992 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 SRBD1Q8N5C6 995 aaKnown RBP21.86■■□□□ 1.09
VPS28-213ENST00000530983 ADGRG1Q9Y653 693 aa21.86■■□□□ 1.09
VPS28-213ENST00000530983 SEMA3EO15041 775 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 SEC31AO94979 1220 aaKnown RBP21.85■■□□□ 1.09
VPS28-213ENST00000530983 E2F4Q16254 413 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 PPFIBP1Q86W92 1011 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 CPLX3Q8WVH0 158 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 STAMQ92783 540 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 CTAGE1Q96RT6 745 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 NAA15Q9BXJ9 866 aaKnown RBP21.85■■□□□ 1.09
VPS28-213ENST00000530983 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.85■■□□□ 1.091e-7■■■■□ 24.2
VPS28-213ENST00000530983 ERICH4A6NGS2 130 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 USP17L12C9JPN9 530 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 USP17L21D6R901 530 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 FAM84BQ96KN1 310 aaPredicted RBP21.85■■□□□ 1.09
VPS28-213ENST00000530983 LAMB1P07942 1786 aa21.85■■□□□ 1.09
VPS28-213ENST00000530983 MYH8P13535 1937 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 NMT2O60551 498 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 MFAP3LO75121 409 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 CAVIN4Q5BKX8 364 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 GPR161Q8N6U8 529 aaKnown RBP21.84■■□□□ 1.09
VPS28-213ENST00000530983 CCDC12Q8WUD4 166 aaPredicted RBP21.84■■□□□ 1.09
VPS28-213ENST00000530983 BSDC1Q9NW68 430 aaPredicted RBP21.84■■□□□ 1.09
VPS28-213ENST00000530983 A0A0U1RQJ8 604 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 ERFEQ4G0M1 354 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 ATRIPQ8WXE1 791 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 LZTFL1Q9NQ48 299 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 CTNND2Q9UQB3 1225 aa21.84■■□□□ 1.09
VPS28-213ENST00000530983 TEX35Q5T0J7 233 aa21.83■■□□□ 1.09
VPS28-213ENST00000530983 MINPP1Q9UNW1 487 aa21.83■■□□□ 1.09
VPS28-213ENST00000530983 GYPCP04921 128 aa21.83■■□□□ 1.08
VPS28-213ENST00000530983 CASP14P31944 242 aa21.83■■□□□ 1.08
VPS28-213ENST00000530983 PDXDC2PQ6P474 469 aa21.83■■□□□ 1.08
VPS28-213ENST00000530983 MTRQ99707 1265 aa21.83■■□□□ 1.08
VPS28-213ENST00000530983 BLZF1Q9H2G9 400 aa21.83■■□□□ 1.08
VPS28-213ENST00000530983 ADAMTS3O15072 1205 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 ORC4O43929 436 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 COBLO75128 1261 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 VEGFAP15692 232 aaPredicted RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 IRX5P78411 483 aaPredicted RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 SF3B3Q15393 1217 aaKnown RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 IL17AQ16552 155 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 FILIP1LQ4L180 1135 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 CC2D1AQ6P1N0 951 aaPredicted RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 PIK3AP1Q6ZUJ8 805 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 IQUBQ8NA54 791 aa21.82■■□□□ 1.08
VPS28-213ENST00000530983 CTCFLQ8NI51 663 aaPredicted RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 NSUN4Q96CB9 384 aaKnown RBP21.82■■□□□ 1.08
VPS28-213ENST00000530983 SCG2P13521 617 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 FXR1P51114 621 aaKnown RBP eCLIP21.81■■□□□ 1.08
VPS28-213ENST00000530983 DDB1Q16531 1140 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 AHDC1Q5TGY3 1603 aaPredicted RBP21.81■■□□□ 1.08
VPS28-213ENST00000530983 ZNF652Q9Y2D9 606 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 ITIH6Q6UXX5 1313 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 ATP8B1O43520 1251 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 SASH3O75995 380 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 TBC1D8O95759 1140 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 FAM47AQ5JRC9 791 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 RASGRP2Q7LDG7 609 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 RABGGTAQ92696 567 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 THRAP3Q9Y2W1 955 aaKnown RBP21.81■■□□□ 1.08
VPS28-213ENST00000530983 KIAA1551Q9HCM1 1747 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 ROBO1Q9Y6N7 1651 aa21.81■■□□□ 1.08
VPS28-213ENST00000530983 FECHP22830 423 aa21.8■■□□□ 1.08
VPS28-213ENST00000530983 KLRK1P26718 216 aa21.8■■□□□ 1.08
VPS28-213ENST00000530983 CCT6AP40227 531 aaKnown RBP21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms