RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 EYA3Q99504 573 aa18.27■□□□□ 0.52
USH1C-204ENST00000526313 TRIM5Q9C035 493 aa18.27■□□□□ 0.52
USH1C-204ENST00000526313 GOLGA6L6A8MZA4 724 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 TRAPPC10P48553 1259 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 GABPAQ06546 454 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 METTL16Q86W50 562 aaKnown RBP18.26■□□□□ 0.51
USH1C-204ENST00000526313 FAM177A1Q8N128 213 aaPredicted RBP18.26■□□□□ 0.51
USH1C-204ENST00000526313 LZTS2Q9BRK4 669 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 BAZ2BQ9UIF8 2168 aaKnown RBP18.26■□□□□ 0.51
USH1C-204ENST00000526313 STYK1Q6J9G0 422 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 MRFAP1L1Q96HT8 127 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 TTC12Q9H892 705 aaPredicted RBP18.26■□□□□ 0.51
USH1C-204ENST00000526313 FAM13BQ9NYF5 915 aa18.26■□□□□ 0.51
USH1C-204ENST00000526313 BECN2A8MW95 431 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 CALML3P27482 149 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 HHIPL2Q6UWX4 724 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 FOXP4Q8IVH2 680 aaPredicted RBP18.25■□□□□ 0.51
USH1C-204ENST00000526313 ZNF830Q96NB3 372 aaPredicted RBP18.25■□□□□ 0.51
USH1C-204ENST00000526313 PLIN4Q96Q06 1357 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.25■□□□□ 0.51
USH1C-204ENST00000526313 CYTH3O43739 400 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 PODNQ7Z5L7 613 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 KCNF1Q9H3M0 494 aa18.25■□□□□ 0.51
USH1C-204ENST00000526313 WNT7AO00755 349 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 SMARCA1P28370 1054 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 NLRP5P59047 1200 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 KIAA2012Q0VF49 1180 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 ZRSR1Q15695 479 aaKnown RBP18.24■□□□□ 0.51
USH1C-204ENST00000526313 DOK7Q18PE1 504 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 NOM1Q5C9Z4 860 aaKnown RBP18.24■□□□□ 0.51
USH1C-204ENST00000526313 AOPEPQ8N6M6 819 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 SPC24Q8NBT2 197 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 CNNM3Q8NE01 707 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 FERMT2Q96AC1 680 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 MRIQ9BWK5 157 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 CSRNP2Q9H175 543 aa18.24■□□□□ 0.51
USH1C-204ENST00000526313 TMX4Q9H1E5 349 aaPredicted RBP18.24■□□□□ 0.51
USH1C-204ENST00000526313 TTF2Q9UNY4 1162 aaKnown RBP18.24■□□□□ 0.51
USH1C-204ENST00000526313 M0R2N6 131 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 FKBP1AP62942 108 aaKnown RBP18.23■□□□□ 0.51
USH1C-204ENST00000526313 PNOCQ13519 176 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 SPECC1Q5M775 1068 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 NT5DC1Q5TFE4 455 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 C2CD5Q86YS7 1000 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 PIBF1Q8WXW3 757 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 SPZ1Q9BXG8 430 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 STX8Q9UNK0 236 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 TOP1P11387 765 aaKnown RBP18.23■□□□□ 0.51
USH1C-204ENST00000526313 ATP2B1P20020 1258 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 ATP2C1P98194 919 aaPredicted RBP18.23■□□□□ 0.51
USH1C-204ENST00000526313 NCAPHQ15003 741 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 TTC38Q5R3I4 469 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 MSL1Q68DK7 614 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 DAGLBQ8NCG7 672 aa18.23■□□□□ 0.51
USH1C-204ENST00000526313 IKBKBO14920 756 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 ADAMTS3O15072 1205 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 GALNT17Q6IS24 598 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 BLIDQ8IZY5 108 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 DDX4Q9NQI0 724 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 PCDHA4Q9UN74 947 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 IGKV6D-41A0A0C4DH26 115 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 H0YIN7 160 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 BIN1O00499 593 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 POLR2DO15514 142 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 ACTN4O43707 911 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 SARSP49591 514 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 APOBEC3HQ6NTF7 200 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 TYW1BQ6NUM6 668 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 USP49Q70CQ1 688 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 ZNF622Q969S3 477 aaKnown RBP eCLIP18.22■□□□□ 0.51
USH1C-204ENST00000526313 CEP95Q96GE4 821 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 MXD3Q9BW11 206 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 HOOK1Q9UJC3 728 aaKnown RBP18.22■□□□□ 0.51
USH1C-204ENST00000526313 PCDHA5Q9Y5H7 936 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 MYO3BQ8WXR4 1341 aa18.22■□□□□ 0.51
USH1C-204ENST00000526313 KANK3Q6NY19 840 aa18.21■□□□□ 0.51
USH1C-204ENST00000526313 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.21■□□□□ 0.51
USH1C-204ENST00000526313 USP40Q9NVE5 1235 aa18.21■□□□□ 0.51
USH1C-204ENST00000526313 BARHL2Q9NY43 387 aa18.21■□□□□ 0.51
USH1C-204ENST00000526313 SLX4Q8IY92 1834 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 C10orf71Q711Q0 1435 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 SMTNL1A8MU46 457 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 KLRF2D3W0D1 207 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 ZNF174Q15697 407 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 SLC15A2Q16348 729 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 CDC42EP5Q6NZY7 148 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 SPATA20Q8TB22 786 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 KIAA1524Q8TCG1 905 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 C7orf43Q8WVR3 580 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 CAMKK2Q96RR4 588 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 SPTLC3Q9NUV7 552 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 SERTAD1Q9UHV2 236 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 ZNF646O15015 1829 aaPredicted RBP18.2■□□□□ 0.5
USH1C-204ENST00000526313 F8W031 263 aaPredicted RBP18.2■□□□□ 0.5
USH1C-204ENST00000526313 STXBP3O00186 592 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 PTGDRQ13258 359 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 POSTNQ15063 836 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 WWC2Q6AWC2 1192 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 PIK3AP1Q6ZUJ8 805 aa18.2■□□□□ 0.5
USH1C-204ENST00000526313 CCDC186Q7Z3E2 898 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms