RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ARMT1Q9H993 441 aa7.99□□□□□ -1.13
CD44-221ENST00000526000 NOP58Q9Y2X3 529 aaKnown RBP7.99□□□□□ -1.13
CD44-221ENST00000526000 POTEB2H3BUK9 544 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 GOLIM4O00461 696 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 CHGBP05060 677 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 SLC9C2Q5TAH2 1124 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 SLC39A5Q6ZMH5 540 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 LPAR1Q92633 364 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 ATG4CQ96DT6 458 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 ZNF512BQ96KM6 892 aaPredicted RBP7.98□□□□□ -1.13
CD44-221ENST00000526000 HOXC10Q9NYD6 342 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 COL2A1P02458 1487 aaPredicted RBP7.98□□□□□ -1.13
CD44-221ENST00000526000 ZNF532Q9HCE3 1301 aa7.98□□□□□ -1.13
CD44-221ENST00000526000 PTPRFP10586 1907 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 SZT2Q5T011 3432 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 KBTBD13C9JR72 458 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 FLOT1O75955 427 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 PGK2P07205 417 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 CYBAP13498 195 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 AKR1B1P15121 316 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 PDE6AP16499 860 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 TAL1P17542 331 aaPredicted RBP7.97□□□□□ -1.13
CD44-221ENST00000526000 DSG3P32926 999 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 HNRNPUQ00839 825 aaKnown RBP eCLIP7.97□□□□□ -1.13
CD44-221ENST00000526000 TLE2Q04725 743 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 GRB14Q14449 540 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 TRIM60Q495X7 471 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 GPR153Q6NV75 609 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 CEP85Q6P2H3 762 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 LBX2Q6XYB7 198 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 SIAH1Q8IUQ4 282 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 LCORLQ8N3X6 602 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 ARRDC4Q8NCT1 418 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 CHMP4CQ96CF2 233 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 CDX2Q99626 313 aaPredicted RBP7.97□□□□□ -1.13
CD44-221ENST00000526000 RIOK1Q9BRS2 568 aaKnown RBP7.97□□□□□ -1.13
CD44-221ENST00000526000 CRNKL1Q9BZJ0 848 aaKnown RBP7.97□□□□□ -1.13
CD44-221ENST00000526000 SPATC1LQ9H0A9 340 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 BOLA2Q9H3K6 86 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 SEMA6BQ9H3T3 888 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 FBXO28Q9NVF7 368 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 ALPK3Q96L96 1907 aa7.97□□□□□ -1.13
CD44-221ENST00000526000 TRIM43BA6NCK2 446 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 DNM1LO00429 736 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 PGK1P00558 417 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 HOXC6P09630 235 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 GABPAQ06546 454 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 FAM47AQ5JRC9 791 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 ZNF697Q5TEC3 545 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.96□□□□□ -1.14
CD44-221ENST00000526000 RHPN1Q8TCX5 695 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 MYLIPQ8WY64 445 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 TRIM43Q96BQ3 446 aaPredicted RBP7.96□□□□□ -1.14
CD44-221ENST00000526000 LENG1Q96BZ8 264 aaPredicted RBP7.96□□□□□ -1.14
CD44-221ENST00000526000 EHD4Q9H223 541 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 DCP1AQ9NPI6 582 aaPredicted RBP7.96□□□□□ -1.14
CD44-221ENST00000526000 ZBED9Q6R2W3 1325 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 PLXNB2O15031 1838 aa7.96□□□□□ -1.14
CD44-221ENST00000526000 DDX60LQ5H9U9 1706 aaKnown RBP7.95□□□□□ -1.14
CD44-221ENST00000526000 USP17L12C9JPN9 530 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 USP17L21D6R901 530 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 STRNO43815 780 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 MSCO60682 206 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 MBD4O95243 580 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 IFIT2P09913 472 aaKnown RBP7.95□□□□□ -1.14
CD44-221ENST00000526000 ITGB8P26012 769 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 CDK8P49336 464 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 EPHB4P54760 987 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 IRX5P78411 483 aaPredicted RBP7.95□□□□□ -1.14
CD44-221ENST00000526000 LRRC41Q15345 812 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 MMP19Q99542 508 aa7.95□□□□□ -1.14
CD44-221ENST00000526000 RANBP2P49792 3224 aaKnown RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 SEPT4O43236 478 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 PQBP1O60828 265 aaKnown RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 FCER1AP12319 257 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 EEF2P13639 858 aaKnown RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 ICA1Q05084 483 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 TMEM132BQ14DG7 1078 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 TTF1Q15361 905 aaPredicted RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 FAM83BQ5T0W9 1011 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 OLFML2BQ68BL8 750 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 TMEM179Q6ZVK1 233 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 CERS3Q8IU89 383 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 ERC1Q8IUD2 1116 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 CLASRPQ8N2M8 674 aaKnown RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 MAFAQ8NHW3 353 aaPredicted RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 PPM1EQ8WY54 764 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 VTI1AQ96AJ9 217 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 MAML3Q96JK9 1138 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 NUP88Q99567 741 aaPredicted RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 TTYH1Q9H313 450 aaPredicted RBP7.94□□□□□ -1.14
CD44-221ENST00000526000 VCPKMTQ9H867 229 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 ARHGEF10LQ9HCE6 1279 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 XPNPEP3Q9NQH7 507 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 PDLIM7Q9NR12 457 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 SLC5A4Q9NY91 659 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 COG6Q9Y2V7 657 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 SIPA1L1O43166 1804 aa7.94□□□□□ -1.14
CD44-221ENST00000526000 LOC285556D6RIA3 1793 aa7.93□□□□□ -1.14
CD44-221ENST00000526000 TCRBV5S4A2TA0A5A2 114 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms