RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SPICE1Q8N0Z3 855 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 SLAIN1Q8ND83 568 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.92■■□□□ 1.58
VPS28-203ENST00000524521 TANGO6Q9C0B7 1094 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 VCPKMTQ9H867 229 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 RABGAP1Q9Y3P9 1069 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 A0A0D9SFI3 127 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 SLC3A2P08195 630 aaKnown RBP24.91■■□□□ 1.58
VPS28-203ENST00000524521 PPARAQ07869 468 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 NMIQ13287 307 aaPredicted RBP24.91■■□□□ 1.58
VPS28-203ENST00000524521 IRF5Q13568 498 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 COG2Q14746 738 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 MTFR1Q15390 333 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 VPS53Q5VIR6 699 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 LPAR1Q92633 364 aa24.91■■□□□ 1.58
VPS28-203ENST00000524521 FOXP2O15409 715 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 ELNP15502 786 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 EN2P19622 333 aaPredicted RBP24.9■■□□□ 1.58
VPS28-203ENST00000524521 UBXN2AP68543 259 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 PDE4BQ07343 736 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 HOXC10Q9NYD6 342 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 GJD2Q9UKL4 321 aa24.9■■□□□ 1.58
VPS28-203ENST00000524521 KIAA0100Q14667 2235 aaKnown RBP24.9■■□□□ 1.58
VPS28-203ENST00000524521 SPDYE16A6NNV3 312 aaPredicted RBP24.89■■□□□ 1.58
VPS28-203ENST00000524521 RAD21O60216 631 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 CNMDO75829 334 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 MAPK4P31152 587 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 LBX2Q6XYB7 198 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 PXYLP1Q8TE99 480 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 PORCNQ9H237 461 aa24.89■■□□□ 1.58
VPS28-203ENST00000524521 SDSP20132 328 aa24.88■■□□□ 1.57
VPS28-203ENST00000524521 CWC22Q9HCG8 908 aaKnown RBP24.88■■□□□ 1.57
VPS28-203ENST00000524521 GOPCQ9HD26 462 aa24.88■■□□□ 1.57
VPS28-203ENST00000524521 BTBD7Q9P203 1132 aa24.88■■□□□ 1.57
VPS28-203ENST00000524521 HTTP42858 3142 aa24.88■■□□□ 1.57
VPS28-203ENST00000524521 CCNA1P78396 465 aa24.87■■□□□ 1.57
VPS28-203ENST00000524521 CTDSPL2Q05D32 466 aa24.87■■□□□ 1.57
VPS28-203ENST00000524521 SAMD1Q6SPF0 538 aaPredicted RBP24.87■■□□□ 1.57
VPS28-203ENST00000524521 NYAP2Q9P242 653 aa24.87■■□□□ 1.57
VPS28-203ENST00000524521 CLIP2Q9UDT6 1046 aa24.87■■□□□ 1.57
VPS28-203ENST00000524521 WDR46O15213 610 aaKnown RBP24.86■■□□□ 1.57
VPS28-203ENST00000524521 FLOT1O75955 427 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 CCL5P13501 91 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 PDE4AP27815 886 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 ALX1Q15699 326 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 PLEKHH3Q7Z736 793 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 NUDT12Q9BQG2 462 aa24.86■■□□□ 1.57
VPS28-203ENST00000524521 INHAP05111 366 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 TSPY3P0CV98 308 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 TSPY8P0CW00 308 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 CYP2B6P20813 491 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 DSG3P32926 999 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 FAM47AQ5JRC9 791 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 WDR78Q5VTH9 848 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 GPR142Q7Z601 462 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 ZNF589Q86UQ0 364 aaPredicted RBP24.85■■□□□ 1.57
VPS28-203ENST00000524521 RNF208Q9H0X6 261 aa24.85■■□□□ 1.57
VPS28-203ENST00000524521 IGKV6D-41A0A0C4DH26 115 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 FGAP02671 866 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 HSPD1P10809 573 aaKnown RBP24.84■■□□□ 1.57
VPS28-203ENST00000524521 TFAP4Q01664 338 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 NEDD1Q8NHV4 660 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 CEP95Q96GE4 821 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 INCENPQ9NQS7 918 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 DIAPH3Q9NSV4 1193 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 CCDC171Q6TFL3 1326 aa24.84■■□□□ 1.57
VPS28-203ENST00000524521 RBBP6Q7Z6E9 1792 aaKnown RBP24.83■■□□□ 1.57
VPS28-203ENST00000524521 GREB1LQ9C091 1923 aaPredicted RBP24.83■■□□□ 1.57
VPS28-203ENST00000524521 MFAP1P55081 439 aaKnown RBP24.83■■□□□ 1.57
VPS28-203ENST00000524521 CWC27Q6UX04 472 aaKnown RBP24.83■■□□□ 1.57
VPS28-203ENST00000524521 ATG4CQ96DT6 458 aa24.83■■□□□ 1.57
VPS28-203ENST00000524521 UNC93B1Q9H1C4 597 aa24.83■■□□□ 1.57
VPS28-203ENST00000524521 MTMR4Q9NYA4 1195 aa24.83■■□□□ 1.57
VPS28-203ENST00000524521 ANAPC4Q9UJX5 808 aa24.83■■□□□ 1.57
VPS28-203ENST00000524521 F5H6K3 240 aa24.82■■□□□ 1.56
VPS28-203ENST00000524521 KLRC3Q07444 240 aa24.82■■□□□ 1.56
VPS28-203ENST00000524521 FAM83BQ5T0W9 1011 aa24.82■■□□□ 1.56
VPS28-203ENST00000524521 MB21D1Q8N884 522 aa24.82■■□□□ 1.56
VPS28-203ENST00000524521 SOCS4Q8WXH5 440 aa24.82■■□□□ 1.56
VPS28-203ENST00000524521 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.82■■□□□ 1.56
VPS28-203ENST00000524521 HIP1O00291 1037 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 TTLL1O95922 423 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 PLS1Q14651 629 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 MORN1Q5T089 497 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 MKL1Q969V6 931 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 FBXO28Q9NVF7 368 aa24.81■■□□□ 1.56
VPS28-203ENST00000524521 PLXNB2O15031 1838 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 TSPY2A6NKD2 308 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 HMGCRP04035 888 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 GJB1P08034 283 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 RGS2P41220 211 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 NKX2-3Q8TAU0 364 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 USP6NLQ92738 828 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 NUP88Q99567 741 aaPredicted RBP24.8■■□□□ 1.56
VPS28-203ENST00000524521 MOV10L1Q9BXT6 1211 aaKnown RBP24.8■■□□□ 1.56
VPS28-203ENST00000524521 SPATC1LQ9H0A9 340 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 TACC3Q9Y6A5 838 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 IVNS1ABPQ9Y6Y0 642 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 RLFQ13129 1914 aa24.8■■□□□ 1.56
VPS28-203ENST00000524521 RANBP6O60518 1105 aaKnown RBP24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms