RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	PRDM12	Q9H4Q4	367 aa		12.89	□□□□□ -0.35
CLDND1-231	ENST00000515620	SNRK	Q9NRH2	765 aa		12.89	□□□□□ -0.35
CLDND1-231	ENST00000515620	SMC4	Q9NTJ3	1288 aa		12.89	□□□□□ -0.35
CLDND1-231	ENST00000515620	HDAC5	Q9UQL6	1122 aa		12.89	□□□□□ -0.35
CLDND1-231	ENST00000515620	SRGAP3	O43295	1099 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	COBL	O75128	1261 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	UQCRFS1P1	P0C7P4	283 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	PPP4C	P60510	307 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	MRPS5	P82675	430 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	IL27	Q8NEV9	243 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	XPNPEP3	Q9NQH7	507 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	TMEM39A	Q9NV64	488 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	BDP1	A6H8Y1	2624 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	ZNF521	Q96K83	1311 aa		12.88	□□□□□ -0.35
CLDND1-231	ENST00000515620	STRN	O43815	780 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	PGK1	P00558	417 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	ERCC3	P19447	782 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	PBX2	P40425	430 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	DYNLL1	P63167	89 aa	Known RBP	12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	CCDC85B	Q15834	202 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	AKNAD1	Q5T1N1	836 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	CCDC129	Q6ZRS4	1044 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	SPATC1L	Q9H0A9	340 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620	SLC5A4	Q9NY91	659 aa		12.87	□□□□□ -0.35
CLDND1-231	ENST00000515620		A0A0G2JMZ2	1700 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620		A0A1W2PQ45	241 aa	Predicted RBP	12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620		A0A1W2PQY0	241 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	GRXCR1	A8MXD5	290 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	RARB	P10826	455 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	ABCB5	Q2M3G0	1257 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	TATDN1	Q6P1N9	297 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	RNF180	Q86T96	592 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	SHCBP1	Q8NEM2	672 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	PBX4	Q9BYU1	374 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	TANGO6	Q9C0B7	1094 aa		12.86	□□□□□ -0.35
CLDND1-231	ENST00000515620	IGFBP4	P22692	258 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	FAAP100	Q0VG06	881 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	PLS1	Q14651	629 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	ALDH1L2	Q3SY69	923 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	CERKL	Q49MI3	558 aa	Predicted RBP	12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	NCAPG2	Q86XI2	1143 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	FAM9B	Q8IZU0	186 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	SLC44A5	Q8NCS7	719 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	LENG1	Q96BZ8	264 aa	Predicted RBP	12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	MAML3	Q96JK9	1138 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	NECAB3	Q96P71	396 aa	Predicted RBP	12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	SERPINB13	Q9UIV8	391 aa		12.85	□□□□□ -0.35
CLDND1-231	ENST00000515620	NCOR1	O75376	2440 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	DCDC2C	A8MYV0	355 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	USP5	P45974	858 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	ADGRE1	Q14246	886 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	COG2	Q14746	738 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	TTC39A	Q5SRH9	613 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	MIGA1	Q8NAN2	632 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	EHD4	Q9H223	541 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	MROH8	Q9H579	483 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620	CABP5	Q9NP86	173 aa		12.84	□□□□□ -0.35
CLDND1-231	ENST00000515620		E9PSI1	815 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	TIMP1	P01033	207 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	CYP2E1	P05181	493 aa	Predicted RBP	12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	CYP7A1	P22680	504 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	MTX1	Q13505	466 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	ANKRD33	Q7Z3H0	272 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	ABRA	Q8N0Z2	381 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	C1QTNF1	Q9BXJ1	281 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	PIH1D3	Q9NQM4	214 aa	Known RBP	12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	STARD7	Q9NQZ5	370 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	HOXC10	Q9NYD6	342 aa		12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	NOB1	Q9ULX3	412 aa	Known RBP	12.83	□□□□□ -0.36
CLDND1-231	ENST00000515620	ROBO3	Q96MS0	1386 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	MYH1	P12882	1939 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	FCER1A	P12319	257 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	TAL1	P17542	331 aa	Predicted RBP	12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	GUCY1A2	P33402	732 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	SHMT1	P34896	483 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	PPIG	Q13427	754 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	SEPT2	Q15019	361 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	TMEM240	Q5SV17	173 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	CCDC174	Q6PII3	467 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	C16orf59	Q7L2K0	433 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	MB21D1	Q8N884	522 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	TOX2	Q96NM4	488 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	API5	Q9BZZ5	524 aa	Known RBP	12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	NRBP1	Q9UHY1	535 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	TBX21	Q9UL17	535 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620	PLXNA1	Q9UIW2	1896 aa		12.82	□□□□□ -0.36
CLDND1-231	ENST00000515620		A0A1W2PRG0	241 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	MPHOSPH10	O00566	681 aa	Known RBP	12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	FLOT1	O75955	427 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	PGK2	P07205	417 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	GNAI3	P08754	354 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	AKR1A1	P14550	325 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	CSF2RA	P15509	400 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	ZAP70	P43403	619 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	ACLY	P53396	1101 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	RASIP1	Q5U651	963 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	MFSD5	Q6N075	450 aa		12.81	□□□□□ -0.36
CLDND1-231	ENST00000515620	TTC6	Q86TZ1	520 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms