RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 A0A0G2JMZ2 1700 aa15.21■□□□□ 0.03
CLCN3-210ENST00000515420 SLC9C1Q4G0N8 1177 aa15.21■□□□□ 0.03
CLCN3-210ENST00000515420 ZNF444Q8N0Y2 327 aaPredicted RBP15.21■□□□□ 0.03
CLCN3-210ENST00000515420 DIAPH3Q9NSV4 1193 aa15.21■□□□□ 0.03
CLCN3-210ENST00000515420 NYAP2Q9P242 653 aa15.21■□□□□ 0.03
CLCN3-210ENST00000515420 RABGAP1Q9Y3P9 1069 aa15.21■□□□□ 0.03
CLCN3-210ENST00000515420 IGKV6D-41A0A0C4DH26 115 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 TNPO2O14787 897 aaKnown RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 WDR46O15213 610 aaKnown RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 HSPD1P10809 573 aaKnown RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 EEF2P13639 858 aaKnown RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 PPP4R3BQ5MIZ7 849 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 VPS53Q5VIR6 699 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 ZNF589Q86UQ0 364 aaPredicted RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 CLEC10AQ8IUN9 316 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 GPRC5AQ8NFJ5 357 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 COA7Q96BR5 231 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 ZNF333Q96JL9 665 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 RPAP3Q9H6T3 665 aaPredicted RBP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 GOPCQ9HD26 462 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLCN3-210ENST00000515420 LAMA4Q16363 1823 aa15.2■□□□□ 0.02
CLCN3-210ENST00000515420 SPDYE16A6NNV3 312 aaPredicted RBP15.19■□□□□ 0.02
CLCN3-210ENST00000515420 FGRP09769 529 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 MAPK4P31152 587 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 ERVK-9P63128 1117 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 ERVK-24P63145 666 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 PRKCZQ05513 592 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 IRF5Q13568 498 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 RAET1EQ8TD07 263 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 HOXC10Q9NYD6 342 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 RBPJLQ9UBG7 517 aa15.19■□□□□ 0.02
CLCN3-210ENST00000515420 ORC4O43929 436 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 FGAP02671 866 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 TSPY3P0CV98 308 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 TSPY8P0CW00 308 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 PCP11498 1178 aaKnown RBP15.18■□□□□ 0.02
CLCN3-210ENST00000515420 GSPT1P15170 499 aaKnown RBP15.18■□□□□ 0.02
CLCN3-210ENST00000515420 CCNA1P78396 465 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 COG2Q14746 738 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 CENPQQ7L2Z9 268 aaPredicted RBP15.18■□□□□ 0.02
CLCN3-210ENST00000515420 MB21D1Q8N884 522 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 SLAIN1Q8ND83 568 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 NEDD1Q8NHV4 660 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 PXYLP1Q8TE99 480 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 MKL1Q969V6 931 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 TXNRD2Q9NNW7 524 aa15.18■□□□□ 0.02
CLCN3-210ENST00000515420 RAD50Q92878 1312 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 PLXNB2O15031 1838 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 KIAA0100Q14667 2235 aaKnown RBP15.17■□□□□ 0.02
CLCN3-210ENST00000515420 PRDM1O75626 825 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 GRK4P32298 578 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 FLT3LGP49771 235 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 NT5C2P49902 561 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 KIAA1755Q5JYT7 1200 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 POTEEQ6S8J3 1075 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 CWC27Q6UX04 472 aaKnown RBP15.17■□□□□ 0.02
CLCN3-210ENST00000515420 STK11IPQ8N1F8 1099 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 TANGO6Q9C0B7 1094 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 MTMR4Q9NYA4 1195 aa15.17■□□□□ 0.02
CLCN3-210ENST00000515420 CNMDO75829 334 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 TTLL1O95922 423 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 SOX10P56693 466 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 ATP2B2Q01814 1243 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 CTDSPL2Q05D32 466 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 SOCS4Q8WXH5 440 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 CEP95Q96GE4 821 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 PAGR1Q9BTK6 254 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 DSCC1Q9BVC3 393 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 GABRQQ9UN88 632 aa15.16■□□□□ 0.02
CLCN3-210ENST00000515420 TSPY2A6NKD2 308 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 FLOT1O75955 427 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 ECM2O94769 699 aaPredicted RBP15.15■□□□□ 0.02
CLCN3-210ENST00000515420 DSG3P32926 999 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 TFAP4Q01664 338 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 Q3C1V9 767 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 CCAR1Q8IX12 1150 aaKnown RBP15.15■□□□□ 0.02
CLCN3-210ENST00000515420 SPICE1Q8N0Z3 855 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 GMCL1P1Q8NEA9 526 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 RUFY2Q8WXA3 655 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 TMEM106CQ9BVX2 250 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 GJD2Q9UKL4 321 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 ZNF236Q9UL36 1845 aa15.15■□□□□ 0.02
CLCN3-210ENST00000515420 ADCY3O60266 1144 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 UBXN2AP68543 259 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 GPR142Q7Z601 462 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 SHCBP1Q8NEM2 672 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 SH3TC2Q8TF17 1288 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 STAG1Q8WVM7 1258 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 NUDT12Q9BQG2 462 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 PORCNQ9H237 461 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 RNF41Q9H4P4 317 aaPredicted RBP15.14■□□□□ 0.01
CLCN3-210ENST00000515420 BTBD7Q9P203 1132 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 CLIP2Q9UDT6 1046 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 ADAMTS5Q9UNA0 930 aa15.14■□□□□ 0.01
CLCN3-210ENST00000515420 COL11A1P12107 1806 aaPredicted RBP15.14■□□□□ 0.01
CLCN3-210ENST00000515420 F5H6K3 240 aa15.13■□□□□ 0.01
CLCN3-210ENST00000515420 XRCC5P13010 732 aaKnown RBP15.13■□□□□ 0.01
CLCN3-210ENST00000515420 NOVP48745 357 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms