RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RCSD1Q6JBY9 416 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 SLF2Q8IX21 1173 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 SHISA4Q96DD7 197 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 LZTS2Q9BRK4 669 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 PLCD1P51178 756 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 GRM4Q14833 912 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 NPY5RQ15761 445 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 ARMCX5Q6P1M9 558 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 VSTM4Q8IW00 320 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 CCDC24Q8N4L8 307 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 RBM17Q96I25 401 aaKnown RBP16.94■□□□□ 0.3
NUP54-217ENST00000514987 FANCLQ9NW38 375 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 NAV1Q8NEY1 1877 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 BBOX1O75936 387 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 USP17L8P0C7I0 530 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 ATP1A3P13637 1013 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 BMP6P22004 513 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 CRY2Q49AN0 593 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 ARL6IP4Q66PJ3 421 aaKnown RBP16.93■□□□□ 0.3
NUP54-217ENST00000514987 SH3RF1Q7Z6J0 888 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 ZNF444Q8N0Y2 327 aaPredicted RBP16.93■□□□□ 0.3
NUP54-217ENST00000514987 GSDMAQ96QA5 445 aa16.93■□□□□ 0.3
NUP54-217ENST00000514987 FOXN1O15353 648 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 NMT2O60551 498 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 TOP1P11387 765 aaKnown RBP16.92■□□□□ 0.3
NUP54-217ENST00000514987 PRR5LQ6MZQ0 368 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 TMC4Q7Z404 712 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 AMIGO3Q86WK7 504 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 FCHSD1Q86WN1 690 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 PNMA1Q8ND90 353 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 CCDC148Q8NFR7 591 aa16.92■□□□□ 0.3
NUP54-217ENST00000514987 SH3RF3Q8TEJ3 882 aaPredicted RBP16.92■□□□□ 0.3
NUP54-217ENST00000514987 hCG_1642624A0A1W2PR95 340 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 FAM205CA6NFA0 338 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 PRR29P0C7W0 189 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 IL1R1P14778 569 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 ZNF18P17022 549 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 CDK11BP21127 795 aaKnown RBP16.91■□□□□ 0.3
NUP54-217ENST00000514987 PTGDRQ13258 359 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 ZNF174Q15697 407 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 EARS2Q5JPH6 523 aaKnown RBP16.91■□□□□ 0.3
NUP54-217ENST00000514987 SLC27A3Q5K4L6 730 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 BLIDQ8IZY5 108 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 PDILTQ8N807 584 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 IQUBQ8NA54 791 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 KIF18AQ8NI77 898 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 TBC1D22AQ8WUA7 517 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 SYMPKQ92797 1274 aaKnown RBP16.91■□□□□ 0.3
NUP54-217ENST00000514987 DHX58Q96C10 678 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 GGA1Q9UJY5 639 aa16.91■□□□□ 0.3
NUP54-217ENST00000514987 TSPY3P0CV98 308 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 TSPY8P0CW00 308 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 LONP1P36776 959 aaKnown RBP16.9■□□□□ 0.3
NUP54-217ENST00000514987 DAGLBQ8NCG7 672 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 FAM163AQ96GL9 167 aaPredicted RBP16.9■□□□□ 0.3
NUP54-217ENST00000514987 PAGE5Q96GU1 130 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 CD209Q9NNX6 404 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 PODXL2Q9NZ53 605 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 PCDHA4Q9UN74 947 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 NFE2L3Q9Y4A8 694 aa16.9■□□□□ 0.3
NUP54-217ENST00000514987 GPR75-ASB3A0A0A6YYF3 556 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 HOXA10P31260 410 aaPredicted RBP16.89■□□□□ 0.3
NUP54-217ENST00000514987 TXLNAP40222 546 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 GPSM2P81274 684 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 MEX3CQ5U5Q3 659 aaKnown RBP16.89■□□□□ 0.3
NUP54-217ENST00000514987 USP49Q70CQ1 688 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 IL17RBQ9NRM6 502 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 UBR3Q6ZT12 1888 aa16.89■□□□□ 0.3
NUP54-217ENST00000514987 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.89■□□□□ 0.29
NUP54-217ENST00000514987 UFL1O94874 794 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 SMARCA1P28370 1054 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 SEMA3FQ13275 785 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 SPATA1Q5VX52 437 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 PIK3AP1Q6ZUJ8 805 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 DPF2Q92785 391 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 EPSTI1Q96J88 318 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 CRAMP1Q96RY5 1269 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 RTFDC1Q9BY42 306 aaPredicted RBP16.89■□□□□ 0.29
NUP54-217ENST00000514987 TMX1Q9H3N1 280 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 JAG2Q9Y219 1238 aa16.89■□□□□ 0.29
NUP54-217ENST00000514987 VWA3AA6NCI4 1184 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 USP27XA6NNY8 438 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 SERPINB2P05120 415 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 EVX2Q03828 476 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 DPYDQ12882 1025 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 FAM182BQ5T319 152 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 E4F1Q66K89 784 aaPredicted RBP16.88■□□□□ 0.29
NUP54-217ENST00000514987 CCDC12Q8WUD4 166 aaPredicted RBP16.88■□□□□ 0.29
NUP54-217ENST00000514987 TGFBRAP1Q8WUH2 860 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 ANKRD7Q92527 254 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 CTAGE1Q96RT6 745 aa16.88■□□□□ 0.29
NUP54-217ENST00000514987 TRPC5Q9UL62 973 aaPredicted RBP16.88■□□□□ 0.29
NUP54-217ENST00000514987 LAD1O00515 517 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 ZSCAN12O43309 604 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 GYS1P13807 737 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 BTDP43251 543 aa16.87■□□□□ 0.29
NUP54-217ENST00000514987 FMR1Q06787 632 aaKnown RBP eCLIP16.87■□□□□ 0.29
NUP54-217ENST00000514987 TBX2Q13207 712 aaPredicted RBP16.87■□□□□ 0.29
NUP54-217ENST00000514987 DIXDC1Q155Q3 683 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms