RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 REC8O95072 547 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 CYP21A2P08686 494 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 IRX3P78415 501 aaPredicted RBP16.84■□□□□ 0.29
NUP54-216ENST00000514901 RNF20Q5VTR2 975 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 CLEC10AQ8IUN9 316 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 GTF3C2Q8WUA4 911 aaPredicted RBP16.84■□□□□ 0.29
NUP54-216ENST00000514901 TTC14Q96N46 770 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 R3HDMLQ9H3Y0 253 aa16.84■□□□□ 0.29
NUP54-216ENST00000514901 GREB1LQ9C091 1923 aaPredicted RBP16.84■□□□□ 0.29
NUP54-216ENST00000514901 LOC285556D6RIA3 1793 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 EPB41L2O43491 1005 aaKnown RBP16.83■□□□□ 0.28
NUP54-216ENST00000514901 FKTNO75072 461 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 VCAM1P19320 739 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 GCLCP48506 637 aaPredicted RBP16.83■□□□□ 0.28
NUP54-216ENST00000514901 NOVP48745 357 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 DGKZQ13574 1117 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 NECTIN1Q15223 517 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 LAMA4Q16363 1823 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 IQCA1Q86XH1 822 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 SMCR8Q8TEV9 937 aaPredicted RBP16.83■□□□□ 0.28
NUP54-216ENST00000514901 ASCC2Q9H1I8 757 aaPredicted RBP16.83■□□□□ 0.28
NUP54-216ENST00000514901 IL17RBQ9NRM6 502 aa16.83■□□□□ 0.28
NUP54-216ENST00000514901 NEDD4P46934 1319 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 WDR46O15213 610 aaKnown RBP16.82■□□□□ 0.28
NUP54-216ENST00000514901 CYP2C8P10632 490 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 SP3Q02447 781 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 C17orf99Q6UX52 265 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 CATSPERGQ6ZRH7 1159 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 RPAP3Q9H6T3 665 aaPredicted RBP16.82■□□□□ 0.28
NUP54-216ENST00000514901 STX8Q9UNK0 236 aa16.82■□□□□ 0.28
NUP54-216ENST00000514901 B4E1Z4 1266 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 F5H6K3 240 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 KDM4AO75164 1064 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 KLRC3Q07444 240 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 ARHGEF6Q15052 776 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 CREB3L3Q68CJ9 461 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 RALYLQ86SE5 291 aaKnown RBP16.81■□□□□ 0.28
NUP54-216ENST00000514901 DGKHQ86XP1 1220 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 GMCL1P1Q8NEA9 526 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 NCOA7Q8NI08 942 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 ZNF296Q8WUU4 475 aaPredicted RBP16.81■□□□□ 0.28
NUP54-216ENST00000514901 P2RX7Q99572 595 aaKnown RBP16.81■□□□□ 0.28
NUP54-216ENST00000514901 HOXC10Q9NYD6 342 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 ZSWIM5Q9P217 1185 aa16.81■□□□□ 0.28
NUP54-216ENST00000514901 ADGRA2Q96PE1 1338 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 E7EWF7 191 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 SLC27A2O14975 620 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 NMT2O60551 498 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 TOP1P11387 765 aaKnown RBP16.8■□□□□ 0.28
NUP54-216ENST00000514901 COG2Q14746 738 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 SPICE1Q8N0Z3 855 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 ANKS1AQ92625 1134 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 ERO1AQ96HE7 468 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 CPA4Q9UI42 421 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 CASP8AP2Q9UKL3 1982 aa16.8■□□□□ 0.28
NUP54-216ENST00000514901 RAD21O60216 631 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 NDUFB10O96000 172 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 BCRP11274 1271 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 ZKSCAN1P17029 563 aaPredicted RBP16.79■□□□□ 0.28
NUP54-216ENST00000514901 HERVK_113P62684 666 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 KIF22Q14807 665 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 TSGA10IPQ3SY00 556 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 KIAA1755Q5JYT7 1200 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 LBX2Q6XYB7 198 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 ZSCAN10Q96SZ4 725 aaPredicted RBP16.79■□□□□ 0.28
NUP54-216ENST00000514901 UBAC1Q9BSL1 405 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 TANGO6Q9C0B7 1094 aa16.79■□□□□ 0.28
NUP54-216ENST00000514901 MYH4Q9Y623 1939 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 MYPNQ86TC9 1320 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 FAM110CQ1W6H9 321 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 SLFN13Q68D06 897 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 LRRC47Q8N1G4 583 aaKnown RBP16.78■□□□□ 0.28
NUP54-216ENST00000514901 TMEM47Q9BQJ4 181 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 GTF3C3Q9Y5Q9 886 aa16.78■□□□□ 0.28
NUP54-216ENST00000514901 FLOT1O75955 427 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 KRT32Q14532 448 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 SART3Q15020 963 aaKnown RBP16.77■□□□□ 0.28
NUP54-216ENST00000514901 RCSD1Q6JBY9 416 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 ANKRD13CQ8N6S4 541 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 MB21D1Q8N884 522 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 GMCL1Q96IK5 515 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 MTA3Q9BTC8 594 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 MORF4L1Q9UBU8 362 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 RABGAP1Q9Y3P9 1069 aa16.77■□□□□ 0.28
NUP54-216ENST00000514901 ERICH2A1L162 156 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 GNRH1P01148 92 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 BMP3P12645 472 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 DSG3P32926 999 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 SLC1A4P43007 532 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 LACTBP83111 547 aaPredicted RBP16.76■□□□□ 0.27
NUP54-216ENST00000514901 FAM83BQ5T0W9 1011 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 STOX1Q6ZVD7 989 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 GPRC5AQ8NFJ5 357 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 NKX2-3Q8TAU0 364 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 KCNB2Q92953 911 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 ZKSCAN3Q9BRR0 538 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 FEM1BQ9UK73 627 aa16.76■□□□□ 0.27
NUP54-216ENST00000514901 TNKSO95271 1327 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 SPDYE16A6NNV3 312 aaPredicted RBP16.75■□□□□ 0.27
NUP54-216ENST00000514901 MCM5P33992 734 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms