RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 PGAP2Q9UHJ9 254 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 SERPINA10Q9UK55 444 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 MARCH6O60337 910 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 CDC27P30260 824 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 NT5C2P49902 561 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 TTC39AQ5SRH9 613 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 LARP1BQ659C4 914 aaKnown RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 WDR93Q6P2C0 686 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 HHIPL2Q6UWX4 724 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 SH3RF1Q7Z6J0 888 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 CKAP2LQ8IYA6 745 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 OGFOD1Q8N543 542 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 SPATA32Q96LK8 384 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 COL4A5P29400 1685 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 SCN9AQ15858 1988 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 KIF28PB7ZC32 967 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 WDHD1O75717 1129 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 CXCL9Q07325 125 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 PTPN14Q15678 1187 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 LDHDQ86WU2 507 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 GPR161Q8N6U8 529 aaKnown RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 FBXW7Q969H0 707 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 SHISA4Q96DD7 197 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 FAM163AQ96GL9 167 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 GMLQ99445 158 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 XPO4Q9C0E2 1151 aaKnown RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 GPRC5DQ9NZD1 345 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 DBNLQ9UJU6 430 aaKnown RBP8.49□□□□□ -1.05
CLIP1-205ENST00000514271 PLCG2P16885 1265 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 NDUFA8P51970 172 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 ANTXR2P58335 489 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 CAMK4Q16566 473 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 BRF1Q92994 677 aa8.49□□□□□ -1.05
CLIP1-205ENST00000514271 CCDC66A2RUB6 948 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 SYF2O95926 243 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 PDIA3P30101 505 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 NTRK3Q16288 839 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 RESP18Q5W5W9 173 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 CCDC102BQ68D86 513 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 TTLL5Q6EMB2 1281 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 APOBEC3FQ8IUX4 373 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 MB21D2Q8IYB1 491 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 GOLGA5Q8TBA6 731 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 RABGGTAQ92696 567 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 RILPL2Q969X0 211 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 TRPM7Q96QT4 1865 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 WDR24Q96S15 920 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 GPBP1L1Q9HC44 474 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 CHGBP05060 677 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 ZFYP08048 801 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 NR1I3Q14994 352 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 ZMYM1Q5SVZ6 1142 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 METTL16Q86W50 562 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 SIL1Q9H173 461 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 PA2G4Q9UQ80 394 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 PPP6R2O75170 966 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 USP17L8P0C7I0 530 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 CMA1P23946 247 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 PSMA5P28066 241 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 ARHGAP25P42331 645 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 CDKAL1Q5VV42 579 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 SMC1BQ8NDV3 1235 aa8.48□□□□□ -1.05
CLIP1-205ENST00000514271 PURBQ96QR8 312 aaKnown RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.48□□□□□ -1.056e-8■□□□□ 10.9
CLIP1-205ENST00000514271 FAM217BQ9NTX9 383 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-205ENST00000514271 GRIN2DO15399 1336 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 CCDC151A5D8V7 595 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 LRRC10BA6NIK2 292 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 TNFAIP1Q13829 316 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 SHC4Q6S5L8 630 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 SH3GL2Q99962 352 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 NOL10Q9BSC4 688 aaKnown RBP8.47□□□□□ -1.05
CLIP1-205ENST00000514271 VIPAS39Q9H9C1 493 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 ZNF541Q9H0D2 1346 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 A0A1B0GTH6 734 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 YDJCA8MPS7 323 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 PSMD14O00487 310 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 DHX16O60231 1041 aaKnown RBP8.47□□□□□ -1.05
CLIP1-205ENST00000514271 PRELPP51888 382 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 AACSQ86V21 672 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 RUFY2Q8WXA3 655 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 ITIH6Q6UXX5 1313 aa8.47□□□□□ -1.05
CLIP1-205ENST00000514271 RIMBP2O15034 1052 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 TNNI2P48788 182 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 SYT10Q6XYQ8 523 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 PACS2Q86VP3 889 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 A1CFQ9NQ94 594 aaKnown RBP8.46□□□□□ -1.05
CLIP1-205ENST00000514271 AGPSO00116 658 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 DTNBO60941 627 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 EPHX2P34913 555 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 CORO7P57737 925 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 PDE4BQ07343 736 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 KRT32Q14532 448 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 CT47A1Q5JQC4 288 aaPredicted RBP8.46□□□□□ -1.05
CLIP1-205ENST00000514271 RASGRP2Q7LDG7 609 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 APBB1IPQ7Z5R6 666 aaPredicted RBP8.46□□□□□ -1.05
CLIP1-205ENST00000514271 PLCD3Q8N3E9 789 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 SPATA5Q8NB90 893 aa8.46□□□□□ -1.05
CLIP1-205ENST00000514271 ZBED3Q96IU2 234 aaPredicted RBP8.46□□□□□ -1.05
CLIP1-205ENST00000514271 PNKPQ96T60 521 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms