RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 NOVA2Q9UNW9 492 aaKnown RBP11.15□□□□□ -0.62
USP53-207ENST00000510852 KDM2BQ8NHM5 1336 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 PNMA6EA0A0J9YXQ4 647 aa11.15□□□□□ -0.63
USP53-207ENST00000510852 NTSR2O95665 410 aa11.15□□□□□ -0.63
USP53-207ENST00000510852 NFIXQ14938 502 aa11.15□□□□□ -0.63
USP53-207ENST00000510852 FAM133BQ5BKY9 247 aaKnown RBP11.15□□□□□ -0.63
USP53-207ENST00000510852 NEK9Q8TD19 979 aa11.15□□□□□ -0.63
USP53-207ENST00000510852 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.15□□□□□ -0.63
USP53-207ENST00000510852 SHTN1A0MZ66 631 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 NR1I2O75469 434 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 SFSWAPQ12872 951 aaKnown RBP11.14□□□□□ -0.63
USP53-207ENST00000510852 NFXL1Q6ZNB6 911 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 CENPQQ7L2Z9 268 aaPredicted RBP11.14□□□□□ -0.63
USP53-207ENST00000510852 RASSF3Q86WH2 238 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 MIGA1Q8NAN2 632 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 CDHR2Q9BYE9 1310 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 IRS4O14654 1257 aaPredicted RBP11.14□□□□□ -0.63
USP53-207ENST00000510852 TCEA3O75764 348 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 CCDC159P0C7I6 412 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 STIP1P31948 543 aaKnown RBP11.14□□□□□ -0.63
USP53-207ENST00000510852 FOXO4P98177 505 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 TMED1Q13445 227 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 MTX1Q13505 466 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 WDR45BQ5MNZ6 344 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 RASGRP2Q7LDG7 609 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 ANKRD42Q8N9B4 389 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 IPCEF1Q8WWN9 437 aaPredicted RBP11.14□□□□□ -0.63
USP53-207ENST00000510852 SELENOOQ9BVL4 669 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 PRM3Q9NNZ6 103 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 SH3TC1Q8TE82 1336 aa11.14□□□□□ -0.63
USP53-207ENST00000510852 TUBGCP6Q96RT7 1819 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 H0Y3Z8 333 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 SRGAP3O43295 1099 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 INMTO95050 263 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 P4HBP07237 508 aaKnown RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 HNRNPCP07910 306 aaKnown RBP eCLIP11.13□□□□□ -0.63
USP53-207ENST00000510852 MASP1P48740 699 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 RABL6Q3YEC7 729 aaPredicted RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 COBLL1Q53SF7 1204 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 ANO1Q5XXA6 986 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 NUTM1Q86Y26 1132 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 CPXCR1Q8N123 301 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 JPH3Q8WXH2 748 aaPredicted RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 SNX21Q969T3 373 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 SPAG5Q96R06 1193 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 PLA2G12BQ9BX93 195 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 SMTNL1A8MU46 457 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 CDC45O75419 566 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 RHOBTB3O94955 611 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 TM4SF1P30408 202 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 ZNF211Q13398 564 aaPredicted RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 TSHZ3Q63HK5 1081 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 PPP2R2DQ66LE6 453 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 METTL3Q86U44 580 aaKnown RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 SSH3Q8TE77 659 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 NYXQ9GZU5 481 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 SLKQ9H2G2 1235 aaPredicted RBP11.13□□□□□ -0.63
USP53-207ENST00000510852 PCDHGB7Q9Y5F8 929 aa11.13□□□□□ -0.63
USP53-207ENST00000510852 CARMIL3Q8ND23 1372 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 H3BRB1 525 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 DPYSL4O14531 572 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 MAP3K7O43318 606 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 ERFEQ4G0M1 354 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 LMBR1LQ6UX01 489 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 UNC5DQ6UXZ4 953 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 STK11IPQ8N1F8 1099 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 TUT1Q9H6E5 874 aaKnown RBP11.12□□□□□ -0.63
USP53-207ENST00000510852 LIMD1Q9UGP4 676 aa11.12□□□□□ -0.63
USP53-207ENST00000510852 PPP4R3AQ6IN85 833 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 TPTE2Q6XPS3 522 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 CNTN3Q9P232 1028 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 GTF2A1LQ9UNN4 478 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 RRP15Q9Y3B9 282 aaKnown RBP11.11□□□□□ -0.63
USP53-207ENST00000510852 PDE8AO60658 829 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 SNX2O60749 519 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 BBOX1O75936 387 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 UBA7P41226 1012 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 PPM1FP49593 454 aaPredicted RBP11.11□□□□□ -0.63
USP53-207ENST00000510852 DDR1Q08345 913 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 HIC1Q14526 733 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 OR8H2Q8N162 312 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 GABPB2Q8TAK5 448 aaPredicted RBP11.11□□□□□ -0.63
USP53-207ENST00000510852 TTC8Q8TAM2 541 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 RPGRQ92834 1020 aaKnown RBP11.11□□□□□ -0.63
USP53-207ENST00000510852 CRISPLD2Q9H0B8 497 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 DCTPP1Q9H773 170 aa11.11□□□□□ -0.63
USP53-207ENST00000510852 CSF1RP07333 972 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 PDE4AP27815 886 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 ZNF76P36508 570 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 CTSWP56202 376 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 PRPF38BQ5VTL8 546 aaKnown RBP11.1□□□□□ -0.63
USP53-207ENST00000510852 CCBE1Q6UXH8 406 aaPredicted RBP11.1□□□□□ -0.63
USP53-207ENST00000510852 ERCC4Q92889 916 aaPredicted RBP11.1□□□□□ -0.63
USP53-207ENST00000510852 FEZ1Q99689 392 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 MRGBPQ9NV56 204 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 POLRMTO00411 1230 aaKnown RBP11.1□□□□□ -0.63
USP53-207ENST00000510852 SERPINB2P05120 415 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 TNFAIP3P21580 790 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 PTPN14Q15678 1187 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 SLC10A5Q5PT55 438 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms