RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 NDUFB9Q9Y6M9 179 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 CDK5RAP2Q96SN8 1893 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 TNRC18O15417 2968 aaPredicted RBP9.67□□□□□ -0.86
SCN1A-207ENST00000507401 MAGEB6P1A0A0J9YX57 407 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 CYP2C8P10632 490 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 PDE6AP16499 860 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 USP5P45974 858 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 BACE1P56817 501 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 RRP1BQ14684 758 aaKnown RBP9.67□□□□□ -0.86
SCN1A-207ENST00000507401 MIGA1Q8NAN2 632 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 LRCH3Q96II8 777 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 TRIM47Q96LD4 638 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 HAUS7Q99871 368 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 SRRDQ9UH36 339 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 SERPINB13Q9UIV8 391 aa9.67□□□□□ -0.86
SCN1A-207ENST00000507401 PTPRFP10586 1907 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 TCRBV5S4A2TA0A5A2 114 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 GOLIM4O00461 696 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 FMNL1O95466 1100 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 HOXA7P31268 230 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 GCLCP48506 637 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 FCGRTP55899 365 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 SLC9C1Q4G0N8 1177 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 IL27Q8NEV9 243 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 SMCR8Q8TEV9 937 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 ZNF333Q96JL9 665 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 CRNKL1Q9BZJ0 848 aaKnown RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 ARHGAP39Q9C0H5 1083 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 DNAJC18Q9H819 358 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 PAG1Q9NWQ8 432 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 TSR3Q9UJK0 312 aaKnown RBP9.66□□□□□ -0.86
SCN1A-207ENST00000507401 PTCH2Q9Y6C5 1203 aa9.66□□□□□ -0.86
SCN1A-207ENST00000507401 ZNF532Q9HCE3 1301 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 MYH1P12882 1939 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 USP17L10C9JJH3 530 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 CTGFP29279 349 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 UBE3CQ15386 1083 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 TREML2Q5T2D2 321 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 ZSCAN25Q6NSZ9 544 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 NYAP1Q6ZVC0 841 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 CCDC84Q86UT8 332 aaPredicted RBP9.65□□□□□ -0.86
SCN1A-207ENST00000507401 DNAJC2Q99543 621 aaKnown RBP9.65□□□□□ -0.86
SCN1A-207ENST00000507401 BACH2Q9BYV9 841 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 BOLA2Q9H3K6 86 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 ATP8A2Q9NTI2 1148 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 ECHDC1Q9NTX5 307 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 DAXXQ9UER7 740 aaPredicted RBP9.65□□□□□ -0.86
SCN1A-207ENST00000507401 SAP30BPQ9UHR5 308 aaKnown RBP9.65□□□□□ -0.86
SCN1A-207ENST00000507401 HTTP42858 3142 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 SIPA1L1O43166 1804 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 ATAD5Q96QE3 1844 aa9.65□□□□□ -0.86
SCN1A-207ENST00000507401 POLR3DP05423 398 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-207ENST00000507401 CAPN2P17655 700 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 ADD2P35612 726 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 HMGCS2P54868 508 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 JAG1P78504 1218 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 FAM110CQ1W6H9 321 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 CERKLQ49MI3 558 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-207ENST00000507401 L1TD1Q5T7N2 865 aaKnown RBP9.64□□□□□ -0.87
SCN1A-207ENST00000507401 RAET1EQ8TD07 263 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 PKNOX2Q96KN3 472 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 TMOD4Q9NZQ9 345 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-207ENST00000507401 ZBTB21Q9ULJ3 1066 aa9.64□□□□□ -0.87
SCN1A-207ENST00000507401 RBBP6Q7Z6E9 1792 aaKnown RBP9.64□□□□□ -0.87
SCN1A-207ENST00000507401 EIF5BO60841 1220 aaKnown RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GDF11O95390 407 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GH2P01242 217 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GRK4P32298 578 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 PLCD1P51178 756 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 IRX6P78412 446 aaPredicted RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GABPAQ06546 454 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 IRF5Q13568 498 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 MTMR2Q13614 643 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 AAMPQ13685 434 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 ABCB5Q2M3G0 1257 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 USP17L2Q6R6M4 530 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 ANKRD13CQ8N6S4 541 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 PXYLP1Q8TE99 480 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GTF3C2Q8WUA4 911 aaPredicted RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 COA7Q96BR5 231 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 GPATCH3Q96I76 525 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 C12orf42Q96LP6 360 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 ASCC2Q9H1I8 757 aaPredicted RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 CABP5Q9NP86 173 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 DCP1AQ9NPI6 582 aaPredicted RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 MCM9Q9NXL9 1143 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 MORF4L1Q9UBU8 362 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 MGAMO43451 1857 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 KIAA0100Q14667 2235 aaKnown RBP9.63□□□□□ -0.87
SCN1A-207ENST00000507401 CENPFP49454 3210 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 LOC285556D6RIA3 1793 aa9.63□□□□□ -0.87
SCN1A-207ENST00000507401 PDE4DIPQ5VU43 2346 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 MYPNQ86TC9 1320 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 TNPO2O14787 897 aaKnown RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 SMARCA5O60264 1052 aaPredicted RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 EN2P19622 333 aaPredicted RBP9.62□□□□□ -0.87
SCN1A-207ENST00000507401 SHMT1P34896 483 aa9.62□□□□□ -0.87
SCN1A-207ENST00000507401 USP14P54578 494 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms