RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	SHMT1	P34896	483 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	PLCD1	P51178	756 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	SEPT2	Q15019	361 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	NPLOC4	Q8TAT6	608 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	LPAR1	Q92633	364 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	FAM161B	Q96MY7	647 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	ATP11B	Q9Y2G3	1177 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	NOP58	Q9Y2X3	529 aa	Known RBP	10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	PRUNE2	Q8WUY3	3088 aa		10.8	□□□□□ -0.68
NR1I3-218	ENST00000503547	MCM3AP	O60318	1980 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	ADORA2A	P29274	412 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	RTP1	P59025	263 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	PLS1	Q14651	629 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	GJC2	Q5T442	439 aa	Predicted RBP	10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	ANO1	Q5XXA6	986 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	ERC1	Q8IUD2	1116 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	MCM9	Q9NXL9	1143 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	EXOC6B	Q9Y2D4	811 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	MYH4	Q9Y623	1939 aa		10.79	□□□□□ -0.68
NR1I3-218	ENST00000503547	APBB1	O00213	710 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	HOXC6	P09630	235 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	CYBA	P13498	195 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	COG2	Q14746	738 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	TTF1	Q15361	905 aa	Predicted RBP	10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	SLC9C2	Q5TAH2	1124 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	ZNF697	Q5TEC3	545 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	TMED8	Q6PL24	325 aa	Predicted RBP	10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	LBX2	Q6XYB7	198 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	NCAPG2	Q86XI2	1143 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	ARRDC4	Q8NCT1	418 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	TRPV1	Q8NER1	839 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	DNAJC2	Q99543	621 aa	Known RBP	10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	SLC5A4	Q9NY91	659 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	HOXC10	Q9NYD6	342 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	CDH23	Q9H251	3354 aa		10.78	□□□□□ -0.68
NR1I3-218	ENST00000503547	VCAN	P13611	3396 aa		10.77	□□□□□ -0.68
NR1I3-218	ENST00000503547	FLOT1	O75955	427 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	PDE6A	P16499	860 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	ERCC3	P19447	782 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	GUCY1A2	P33402	732 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	CEP85	Q6P2H3	762 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	SDR42E1	Q8WUS8	393 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	RIOK1	Q9BRS2	568 aa	Known RBP	10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	SPATC1L	Q9H0A9	340 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	ARHGEF10L	Q9HCE6	1279 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	IL1RAPL2	Q9NP60	686 aa		10.77	□□□□□ -0.69
NR1I3-218	ENST00000503547	GOLIM4	O00461	696 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	SEPT4	O43236	478 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	STRN	O43815	780 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	RLBP1	P12271	317 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	EVX2	Q03828	476 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	HSP90AB4P	Q58FF6	505 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	OLFML2B	Q68BL8	750 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	TMEM179	Q6ZVK1	233 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	SPICE1	Q8N0Z3	855 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	MB21D1	Q8N884	522 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	SLC44A5	Q8NCS7	719 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	FERMT2	Q96AC1	680 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	GUCD1	Q96NT3	240 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	SH2D4A	Q9H788	454 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547	ZNF532	Q9HCE3	1301 aa		10.76	□□□□□ -0.69
NR1I3-218	ENST00000503547		A0A1W2PRG0	241 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	POTEB2	H3BUK9	544 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	RAD21	O60216	631 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	COBL	O75128	1261 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	IFIT2	P09913	472 aa	Known RBP	10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	CYP2D6	P10635	497 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	ICA1	Q05084	483 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	GABPA	Q06546	454 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	TRIM60	Q495X7	471 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	SLC39A5	Q6ZMH5	540 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	CLEC10A	Q8IUN9	316 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	AMOTL1	Q8IY63	956 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	CLASRP	Q8N2M8	674 aa	Known RBP	10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	LCORL	Q8N3X6	602 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	SHCBP1	Q8NEM2	672 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	ATG4C	Q96DT6	458 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	MROH8	Q9H579	483 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	SWAP70	Q9UH65	585 aa		10.75	□□□□□ -0.69
NR1I3-218	ENST00000503547	FCER1A	P12319	257 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	ADCYAP1R1	P41586	468 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	C1QBP	Q07021	282 aa	Known RBP	10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	SHH	Q15465	462 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	FAM47A	Q5JRC9	791 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	KIAA1755	Q5JYT7	1200 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	PRAMEF19	Q5SWL8	479 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	RHPN1	Q8TCX5	695 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	BAD	Q92934	168 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	DYNLL2	Q96FJ2	89 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	DDRGK1	Q96HY6	314 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	ARMT1	Q9H993	441 aa		10.74	□□□□□ -0.69
NR1I3-218	ENST00000503547	MBD4	O95243	580 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms