RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PCDHB6Q9Y5E3 794 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 UBE2Q2LH0YL09 131 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 SCG2P13521 617 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 ATP2B4P23634 1241 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 FANCCQ00597 558 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 NFIXQ14938 502 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 C12orf60Q5U649 245 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 TMC4Q7Z404 712 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 CMTR1Q8N1G2 835 aaKnown RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 LZTS2Q9BRK4 669 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 TCP11L1Q9NUJ3 509 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 PCDHA5Q9Y5H7 936 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 V9GY48 417 aaPredicted RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 LRRC37AA6NMS7 1700 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 A0A087WWV3 80 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 WTIPA6NIX2 430 aaPredicted RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 POLR2DO15514 142 aaKnown RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 PLEKHA8P1O95397 391 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 SERPINC1P01008 464 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 PFKFB3Q16875 520 aaPredicted RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 GALNT17Q6IS24 598 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 NLGN2Q8NFZ4 835 aa13.68□□□□□ -0.22
NUP54-202ENST00000502850 RBM17Q96I25 401 aaKnown RBP13.68□□□□□ -0.22
NUP54-202ENST00000502850 DDX60LQ5H9U9 1706 aaKnown RBP13.67□□□□□ -0.22
NUP54-202ENST00000502850 CDK5RAP2Q96SN8 1893 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 TNNT1P13805 278 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 CCZ1BP86790 482 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 CCZ1P86791 482 aaPredicted RBP13.67□□□□□ -0.22
NUP54-202ENST00000502850 MDM2Q00987 491 aaPredicted RBP13.67□□□□□ -0.22
NUP54-202ENST00000502850 TTC38Q5R3I4 469 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 TMC6Q7Z403 805 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 CCDC148Q8NFR7 591 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 OXER1Q8TDS5 423 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 TBC1D22AQ8WUA7 517 aa13.67□□□□□ -0.22
NUP54-202ENST00000502850 ACTN4O43707 911 aaKnown RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 ERCC5P28715 1186 aaPredicted RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 LMOD1P29536 600 aaPredicted RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 SARSP49591 514 aaKnown RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 UBASH3AP57075 661 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 NLRP5P59047 1200 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 MORC3Q14149 939 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 SYCP1Q15431 976 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 CRY2Q49AN0 593 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 ENOX1Q8TC92 643 aaKnown RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 TNFRSF25Q93038 417 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 C16orf45Q96MC5 204 aaPredicted RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 CSRNP2Q9H175 543 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 MKNK2Q9HBH9 465 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 MKRN1Q9UHC7 482 aaKnown RBP13.66□□□□□ -0.22
NUP54-202ENST00000502850 MAN1B1Q9UKM7 699 aa13.66□□□□□ -0.22
NUP54-202ENST00000502850 FOCADQ5VW36 1801 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 BBOX1O75936 387 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 SLFN14P0C7P3 912 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 ATP2C1P98194 919 aaPredicted RBP13.65□□□□□ -0.22
NUP54-202ENST00000502850 TFAP4Q01664 338 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 GRM4Q14833 912 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 PTPN14Q15678 1187 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 PRR5LQ6MZQ0 368 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 SRBD1Q8N5C6 995 aaKnown RBP13.65□□□□□ -0.22
NUP54-202ENST00000502850 SPATA20Q8TB22 786 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 SERTAD1Q9UHV2 236 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 GGA1Q9UJY5 639 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 CD2APQ9Y5K6 639 aa13.65□□□□□ -0.22
NUP54-202ENST00000502850 TSPY3P0CV98 308 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 TSPY8P0CW00 308 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 IL1R1P14778 569 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 ATP2B1P20020 1258 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 TXLNAP40222 546 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 PLCD1P51178 756 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 CFAP100Q494V2 611 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 GLIPR1L2Q4G1C9 344 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 FAM47AQ5JRC9 791 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 CEP135Q66GS9 1140 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 ARL6IP4Q66PJ3 421 aaKnown RBP13.64□□□□□ -0.23
NUP54-202ENST00000502850 TXNRD3Q86VQ6 643 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 ZNF444Q8N0Y2 327 aaPredicted RBP13.64□□□□□ -0.23
NUP54-202ENST00000502850 CCAR2Q8N163 923 aaKnown RBP13.64□□□□□ -0.23
NUP54-202ENST00000502850 PNMA1Q8ND90 353 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 RIOK3O14730 519 aaKnown RBP13.64□□□□□ -0.23
NUP54-202ENST00000502850 USP17L8P0C7I0 530 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 CYP2D6P10635 497 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 RCSD1Q6JBY9 416 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 CCDC24Q8N4L8 307 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 CCDC12Q8WUD4 166 aaPredicted RBP13.64□□□□□ -0.23
NUP54-202ENST00000502850 GSDMAQ96QA5 445 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 PODXL2Q9NZ53 605 aa13.64□□□□□ -0.23
NUP54-202ENST00000502850 SMIM22K7EJ46 135 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 UFL1O94874 794 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 TOP1P11387 765 aaKnown RBP13.63□□□□□ -0.23
NUP54-202ENST00000502850 HOXA10P31260 410 aaPredicted RBP13.63□□□□□ -0.23
NUP54-202ENST00000502850 ISM2Q6H9L7 571 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 NYAP1Q6ZVC0 841 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 FCHSD1Q86WN1 690 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 VSTM4Q8IW00 320 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 BLIDQ8IZY5 108 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 IQUBQ8NA54 791 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 DAGLBQ8NCG7 672 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 SH3RF3Q8TEJ3 882 aaPredicted RBP13.63□□□□□ -0.23
NUP54-202ENST00000502850 CRAMP1Q96RY5 1269 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 HSD3B7Q9H2F3 369 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms