RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 GPRASP2Q96D09 838 aa9.47□□□□□ -0.89
SF3B1-212ENST00000496458 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.47□□□□□ -0.89
SF3B1-212ENST00000496458 DUSP15Q9H1R2 295 aaPredicted RBP9.47□□□□□ -0.89
SF3B1-212ENST00000496458 TRIT1Q9H3H1 467 aaKnown RBP9.47□□□□□ -0.89
SF3B1-212ENST00000496458 GINM1Q9NU53 330 aa9.47□□□□□ -0.89
SF3B1-212ENST00000496458 IMPDH2P12268 514 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 RAD51AP2Q09MP3 1159 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 LRRN4CLQ8ND94 238 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 VWCEQ96DN2 955 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 TGIF2Q9GZN2 237 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 GPATCH2Q9NW75 528 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 LMCD1Q9NZU5 365 aa9.46□□□□□ -0.9
SF3B1-212ENST00000496458 TNFRSF10CO14798 259 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 TPP2P29144 1249 aaPredicted RBP9.45□□□□□ -0.9
SF3B1-212ENST00000496458 RNF4P78317 190 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 CCDC81Q6ZN84 652 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 GPR62Q9BZJ7 368 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 ACBD3Q9H3P7 528 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 CCSER2Q9H7U1 834 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 EFR3BQ9Y2G0 817 aa9.45□□□□□ -0.9
SF3B1-212ENST00000496458 FAM86C2PA6NEL3 165 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 CLEC3AO75596 197 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 SRFP11831 508 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 CCNFP41002 786 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 ZNF512BQ96KM6 892 aaPredicted RBP9.44□□□□□ -0.9
SF3B1-212ENST00000496458 SPATA32Q96LK8 384 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 SLC9A7Q96T83 725 aa9.44□□□□□ -0.9
SF3B1-212ENST00000496458 SHISA3A0PJX4 238 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 TCF3P15923 654 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 GJA8P48165 433 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 COL9A2Q14055 689 aaPredicted RBP9.43□□□□□ -0.9
SF3B1-212ENST00000496458 TMPRSS7Q7RTY8 843 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 CREG2Q8IUH2 290 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 RASGRP4Q8TDF6 673 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 SLC6A18Q96N87 628 aa9.43□□□□□ -0.9
SF3B1-212ENST00000496458 ESR1P03372 595 aa9.42□□□□□ -0.9
SF3B1-212ENST00000496458 GAB4Q2WGN9 574 aa9.42□□□□□ -0.9
SF3B1-212ENST00000496458 NBPF12Q5TAG4 269 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-212ENST00000496458 TSPYL5Q86VY4 417 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-212ENST00000496458 TMEM192Q8IY95 271 aa9.42□□□□□ -0.9
SF3B1-212ENST00000496458 DUSP13Q9UII6 198 aa9.42□□□□□ -0.9
SF3B1-212ENST00000496458 INPP5FQ9Y2H2 1132 aa9.42□□□□□ -0.9
SF3B1-212ENST00000496458 ACRP10323 421 aa9.41□□□□□ -0.9
SF3B1-212ENST00000496458 ITGB5P18084 799 aa9.41□□□□□ -0.9
SF3B1-212ENST00000496458 ERCC5P28715 1186 aaPredicted RBP9.41□□□□□ -0.9
SF3B1-212ENST00000496458 SOX9P48436 509 aa9.41□□□□□ -0.9
SF3B1-212ENST00000496458 CLEC16AQ2KHT3 1053 aa9.41□□□□□ -0.9
SF3B1-212ENST00000496458 RUFY4Q6ZNE9 571 aa9.4□□□□□ -0.9
SF3B1-212ENST00000496458 LSRQ86X29 649 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-212ENST00000496458 RBBP8NLQ8NC74 664 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-212ENST00000496458 TM9SF2Q99805 663 aa9.4□□□□□ -0.9
SF3B1-212ENST00000496458 MKRN2Q9H000 416 aaKnown RBP9.4□□□□□ -0.9
SF3B1-212ENST00000496458 ASCC2Q9H1I8 757 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-212ENST00000496458 SLAMF8Q9P0V8 285 aa9.4□□□□□ -0.9
SF3B1-212ENST00000496458 BIN1O00499 593 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 PAPLNO95428 1278 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 LTKP29376 864 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 NASPP49321 788 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-212ENST00000496458 NMIQ13287 307 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-212ENST00000496458 SNW1Q13573 536 aaKnown RBP9.39□□□□□ -0.91
SF3B1-212ENST00000496458 NBPF9Q3BBW0 867 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 INTS3Q68E01 1043 aaKnown RBP9.39□□□□□ -0.91
SF3B1-212ENST00000496458 ATG4DQ86TL0 474 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-212ENST00000496458 ALPK1Q96QP1 1244 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 CRBNQ96SW2 442 aa9.39□□□□□ -0.91
SF3B1-212ENST00000496458 JUNBP17275 347 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-212ENST00000496458 GUCY2CP25092 1073 aa9.38□□□□□ -0.91
SF3B1-212ENST00000496458 EGR3Q06889 387 aa9.38□□□□□ -0.91
SF3B1-212ENST00000496458 TMC3Q7Z5M5 1100 aa9.38□□□□□ -0.91
SF3B1-212ENST00000496458 TAB3Q8N5C8 712 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-212ENST00000496458 SRRTQ9BXP5 876 aaKnown RBP9.38□□□□□ -0.91
SF3B1-212ENST00000496458 CTNND2Q9UQB3 1225 aa9.38□□□□□ -0.91
SF3B1-212ENST00000496458 PCDHA11Q9Y5I1 949 aa9.38□□□□□ -0.91
SF3B1-212ENST00000496458 EIF6P56537 245 aaKnown RBP9.37□□□□□ -0.91
SF3B1-212ENST00000496458 ZYXQ15942 572 aaKnown RBP9.37□□□□□ -0.91
SF3B1-212ENST00000496458 FLAD1Q8NFF5 587 aa9.37□□□□□ -0.91
SF3B1-212ENST00000496458 SUCOQ9UBS9 1254 aaKnown RBP9.37□□□□□ -0.91
SF3B1-212ENST00000496458 DNAJC25-GNG10A0A024R161 153 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 PAX4O43316 350 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 RALGPS1Q5JS13 557 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 TDRD10Q5VZ19 366 aaKnown RBP9.36□□□□□ -0.91
SF3B1-212ENST00000496458 DHRS1Q96LJ7 313 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 HDAC8Q9BY41 377 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 PRDM14Q9GZV8 571 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 C19orf73Q9NVV2 129 aa9.36□□□□□ -0.91
SF3B1-212ENST00000496458 C9IYK1 514 aa9.35□□□□□ -0.91
SF3B1-212ENST00000496458 UNC5AQ6ZN44 842 aa9.35□□□□□ -0.91
SF3B1-212ENST00000496458 SYTL5Q8TDW5 730 aaPredicted RBP9.35□□□□□ -0.91
SF3B1-212ENST00000496458 CPLX3Q8WVH0 158 aa9.35□□□□□ -0.91
SF3B1-212ENST00000496458 ASIC4Q96FT7 647 aa9.35□□□□□ -0.91
SF3B1-212ENST00000496458 GIPRP48546 466 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 PMS1P54277 932 aaKnown RBP9.34□□□□□ -0.91
SF3B1-212ENST00000496458 TTC6Q86TZ1 520 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 CCDC144CPQ8IYA2 1237 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 ENOX1Q8TC92 643 aaKnown RBP9.34□□□□□ -0.91
SF3B1-212ENST00000496458 CCDC120Q96HB5 630 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 SEC16BQ96JE7 1060 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 CAPN10Q9HC96 672 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 FAM86C1Q9NVL1 165 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 TMEM59LQ9UK28 342 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms