RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TEX51A0A1B0GUA7 166 aa7.71□□□□□ -1.18
VPS50-219ENST00000495039 PLCG1P19174 1290 aa7.71□□□□□ -1.18
VPS50-219ENST00000495039 SNX17Q15036 470 aa7.71□□□□□ -1.18
VPS50-219ENST00000495039 JARID2Q92833 1246 aaPredicted RBP7.71□□□□□ -1.18
VPS50-219ENST00000495039 ZNF552Q9H707 407 aaPredicted RBP7.71□□□□□ -1.18
VPS50-219ENST00000495039 CNOT6Q9ULM6 557 aaKnown RBP7.71□□□□□ -1.18
VPS50-219ENST00000495039 PDE6BP35913 854 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 ANKS4BQ8N8V4 417 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 RELTQ969Z4 430 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 C20orf173Q96LM9 149 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 ZCCHC4Q9H5U6 513 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 GPR160Q9UJ42 338 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 CORINQ9Y5Q5 1042 aa7.7□□□□□ -1.18
VPS50-219ENST00000495039 RFXAPO00287 272 aa7.69□□□□□ -1.18
VPS50-219ENST00000495039 BMP7P18075 431 aa7.69□□□□□ -1.18
VPS50-219ENST00000495039 ZNF385BQ569K4 471 aa7.69□□□□□ -1.18
VPS50-219ENST00000495039 TMEM201Q5SNT2 666 aa7.69□□□□□ -1.18
VPS50-219ENST00000495039 TCERG1LQ5VWI1 586 aa7.69□□□□□ -1.18
VPS50-219ENST00000495039 UPK3BL1B0FP48 263 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 UPK3BL2E5RIL1 263 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 LRRN2O75325 713 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 BPNT1O95861 308 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 TNNI2P48788 182 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 KCNA1Q09470 495 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 CCDC84Q86UT8 332 aaPredicted RBP7.68□□□□□ -1.18
VPS50-219ENST00000495039 SLFN12Q8IYM2 578 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 ASPNQ9BXN1 380 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 TLR6Q9Y2C9 796 aa7.68□□□□□ -1.18
VPS50-219ENST00000495039 RBM47A0AV96 593 aaKnown RBP7.67□□□□□ -1.18
VPS50-219ENST00000495039 SUPT5HO00267 1087 aaKnown RBP7.67□□□□□ -1.18
VPS50-219ENST00000495039 TEKQ02763 1124 aa7.67□□□□□ -1.18
VPS50-219ENST00000495039 MEI1Q5TIA1 1274 aa7.67□□□□□ -1.18
VPS50-219ENST00000495039 TMEM151BQ8IW70 566 aa7.67□□□□□ -1.18
VPS50-219ENST00000495039 DUSP9Q99956 384 aaKnown RBP7.67□□□□□ -1.18
VPS50-219ENST00000495039 NOC4LQ9BVI4 516 aaKnown RBP7.67□□□□□ -1.18
VPS50-219ENST00000495039 GCM1Q9NP62 436 aa7.67□□□□□ -1.18
VPS50-219ENST00000495039 KCTD3Q9Y597 815 aa7.67□□□□□ -1.18
VPS50-219ENST00000495039 CLEC16AQ2KHT3 1053 aa7.66□□□□□ -1.18
VPS50-219ENST00000495039 PHC3Q8NDX5 983 aa7.66□□□□□ -1.18
VPS50-219ENST00000495039 KREMEN1Q96MU8 473 aa7.66□□□□□ -1.18
VPS50-219ENST00000495039 KCNC2Q96PR1 638 aa7.66□□□□□ -1.18
VPS50-219ENST00000495039 PSPNO60542 156 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 ST13P50502 369 aaKnown RBP7.65□□□□□ -1.18
VPS50-219ENST00000495039 LINC01599Q8WXQ3 324 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 SHISA4Q96DD7 197 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 CCDC74BQ96LY2 380 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 SGPP1Q9BX95 441 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 EBF1Q9UH73 591 aa7.65□□□□□ -1.18
VPS50-219ENST00000495039 A0A0G2JLL6 359 aaPredicted RBP7.64□□□□□ -1.19
VPS50-219ENST00000495039 SHISA3A0PJX4 238 aa7.64□□□□□ -1.19
VPS50-219ENST00000495039 OR14I1A6ND48 311 aa7.64□□□□□ -1.19
VPS50-219ENST00000495039 CILPO75339 1184 aa7.64□□□□□ -1.19
VPS50-219ENST00000495039 TAF1CQ15572 869 aaPredicted RBP7.64□□□□□ -1.19
VPS50-219ENST00000495039 PRR36Q9H6K5 1346 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 CHMP4BP1P59074 171 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 ADGRF1Q5T601 910 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 BNC2Q6ZN30 1099 aaPredicted RBP7.63□□□□□ -1.19
VPS50-219ENST00000495039 MARCH10Q8NA82 808 aaPredicted RBP7.63□□□□□ -1.19
VPS50-219ENST00000495039 G6PC3Q9BUM1 346 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 ASCC2Q9H1I8 757 aaPredicted RBP7.63□□□□□ -1.19
VPS50-219ENST00000495039 RNF19AQ9NV58 838 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 KLHL3Q9UH77 587 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 ZNF281Q9Y2X9 895 aa7.63□□□□□ -1.19
VPS50-219ENST00000495039 FAM221AA4D161 298 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 HRKO00198 91 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 FOXD2O60548 495 aaPredicted RBP7.62□□□□□ -1.19
VPS50-219ENST00000495039 GALK1P51570 392 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 SSPNQ14714 243 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 EAPPQ56P03 285 aaPredicted RBP7.62□□□□□ -1.19
VPS50-219ENST00000495039 RNF111Q6ZNA4 994 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 PHACTR4Q8IZ21 702 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 ENOX1Q8TC92 643 aaKnown RBP7.62□□□□□ -1.19
VPS50-219ENST00000495039 GATAD2BQ8WXI9 593 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 REV1Q9UBZ9 1251 aa7.62□□□□□ -1.19
VPS50-219ENST00000495039 TRIM13O60858 407 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 SYN1P17600 705 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 LMNB2Q03252 620 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 CAMK2GQ13555 558 aaPredicted RBP7.61□□□□□ -1.19
VPS50-219ENST00000495039 NFIXQ14938 502 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 NLRX1Q86UT6 975 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 SIGLEC10Q96LC7 697 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 IRAK3Q9Y616 596 aa7.61□□□□□ -1.19
VPS50-219ENST00000495039 CHURC1-FNTBB4DL54 471 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 HTR3BO95264 441 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 PI3P19957 117 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 RPL10P27635 214 aaKnown RBP7.6□□□□□ -1.19
VPS50-219ENST00000495039 SRSF3P84103 164 aaKnown RBP7.6□□□□□ -1.19
VPS50-219ENST00000495039 NMIQ13287 307 aaPredicted RBP7.6□□□□□ -1.19
VPS50-219ENST00000495039 ERICH6Q7L0X2 663 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 SIRT2Q8IXJ6 389 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 SYTL5Q8TDW5 730 aaPredicted RBP7.6□□□□□ -1.19
VPS50-219ENST00000495039 CRTAC1Q9NQ79 661 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 RTEL1Q9NZ71 1219 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 MBD1Q9UIS9 605 aaPredicted RBP7.6□□□□□ -1.19
VPS50-219ENST00000495039 ZMYM5Q9UJ78 669 aa7.6□□□□□ -1.19
VPS50-219ENST00000495039 NOTOA8MTQ0 251 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 USP2O75604 605 aaPredicted RBP7.59□□□□□ -1.19
VPS50-219ENST00000495039 F13A1P00488 732 aa7.59□□□□□ -1.19
VPS50-219ENST00000495039 KIR2DL1P43626 348 aaPredicted RBP7.59□□□□□ -1.19
VPS50-219ENST00000495039 KIR2DL2P43627 348 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms