RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 TBX2Q13207 712 aaPredicted RBP13.07□□□□□ -0.32
RFC4-214ENST00000494047 PNOCQ13519 176 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 HLFQ16534 295 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 TEX35Q5T0J7 233 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 ARL6IP4Q66PJ3 421 aaKnown RBP13.07□□□□□ -0.32
RFC4-214ENST00000494047 GALNT17Q6IS24 598 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 PRR5LQ6MZQ0 368 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 NBPF5PQ86XG9 351 aaPredicted RBP13.07□□□□□ -0.32
RFC4-214ENST00000494047 IQCDQ96DY2 449 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 RAI14Q9P0K7 980 aa13.07□□□□□ -0.32
RFC4-214ENST00000494047 NIP7Q9Y221 180 aaKnown RBP eCLIP13.07□□□□□ -0.32
RFC4-214ENST00000494047 MYH13Q9UKX3 1938 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 MAGEB6P1A0A0J9YX57 407 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 USP27XA6NNY8 438 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 ORC4O43929 436 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 CBX1P83916 185 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 LONRF3Q496Y0 759 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 SPATA1Q5VX52 437 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 TMCO3Q6UWJ1 677 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 PI16Q6UXB8 463 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 PPFIBP1Q86W92 1011 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 GPR161Q8N6U8 529 aaKnown RBP13.06□□□□□ -0.32
RFC4-214ENST00000494047 NYXQ9GZU5 481 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 MAGEF1Q9HAY2 307 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 SH3GLB2Q9NR46 395 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 TOMM22Q9NS69 142 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 TRMT1Q9NXH9 659 aaKnown RBP13.06□□□□□ -0.32
RFC4-214ENST00000494047 ARPP21Q9UBL0 812 aaPredicted RBP13.06□□□□□ -0.32
RFC4-214ENST00000494047 MAN1B1Q9UKM7 699 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 NFE2L3Q9Y4A8 694 aa13.06□□□□□ -0.32
RFC4-214ENST00000494047 A0A1B0GTH6 734 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 CASQ1P31415 396 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 GNAQP50148 359 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 GPS2Q13227 327 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 IFIT1BQ5T764 474 aaKnown RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 SYT10Q6XYQ8 523 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 C2CD5Q86YS7 1000 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 MSL3Q8N5Y2 521 aaKnown RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 TTLL6Q8N841 843 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 IQUBQ8NA54 791 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 CTCFLQ8NI51 663 aaPredicted RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 ZSCAN10Q96SZ4 725 aaPredicted RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 HSD3B7Q9H2F3 369 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 ARMT1Q9H993 441 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 FAM53CQ9NYF3 392 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 TTF2Q9UNY4 1162 aaKnown RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 PPP2R2CQ9Y2T4 447 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 V9GYY5 206 aaPredicted RBP13.05□□□□□ -0.32
RFC4-214ENST00000494047 CCDC88AQ3V6T2 1871 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 TNKSO95271 1327 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 SYNRGQ9UMZ2 1314 aa13.05□□□□□ -0.32
RFC4-214ENST00000494047 BTBD18B2RXH4 712 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 AKR1B15C9JRZ8 316 aaPredicted RBP13.04□□□□□ -0.32
RFC4-214ENST00000494047 LAD1O00515 517 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 POLR2DO15514 142 aaKnown RBP13.04□□□□□ -0.32
RFC4-214ENST00000494047 ACTN4O43707 911 aaKnown RBP13.04□□□□□ -0.32
RFC4-214ENST00000494047 CHRNA5P30532 468 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 ORC2Q13416 577 aaPredicted RBP13.04□□□□□ -0.32
RFC4-214ENST00000494047 ARID5BQ14865 1188 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 ANKRD18AQ8IVF6 992 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 STK11IPQ8N1F8 1099 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 CEP112Q8N8E3 955 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 CCDC85AQ96PX6 553 aaPredicted RBP13.04□□□□□ -0.32
RFC4-214ENST00000494047 PHF20Q9BVI0 1012 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 ATP8A2Q9NTI2 1148 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 FANCLQ9NW38 375 aa13.04□□□□□ -0.32
RFC4-214ENST00000494047 KIF5CO60282 957 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 CYP7A1P22680 504 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 PDE4BQ07343 736 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 SF3B3Q15393 1217 aaKnown RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 SEC23AQ15436 765 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 ELF2Q15723 593 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 SPTY2D1Q68D10 685 aaPredicted RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 AMOTL1Q8IY63 956 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 ZNF784Q8NCA9 323 aaPredicted RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 CCDC148Q8NFR7 591 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 NOC3LQ8WTT2 800 aaKnown RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 TSC1Q92574 1164 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 RABGGTAQ92696 567 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 CRNKL1Q9BZJ0 848 aaKnown RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 ANKRD2Q9GZV1 360 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 GBP3Q9H0R5 595 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 CUEDC2Q9H467 287 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 ZNF287Q9HBT7 754 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 BSDC1Q9NW68 430 aaPredicted RBP13.03□□□□□ -0.32
RFC4-214ENST00000494047 ANKRD31Q8N7Z5 1873 aa13.03□□□□□ -0.32
RFC4-214ENST00000494047 CACNA1SQ13698 1873 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 KLRG2A4D1S0 409 aaPredicted RBP13.02□□□□□ -0.33
RFC4-214ENST00000494047 NTSR2O95665 410 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 MCM3P25205 808 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 LONP1P36776 959 aaKnown RBP13.02□□□□□ -0.33
RFC4-214ENST00000494047 ATP2C1P98194 919 aaPredicted RBP13.02□□□□□ -0.33
RFC4-214ENST00000494047 CTDSPL2Q05D32 466 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 STIM1Q13586 685 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 KMT5BQ4FZB7 885 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 SBK1Q52WX2 424 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 STYK1Q6J9G0 422 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 FBXO38Q6PIJ6 1188 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 ARHGAP27Q6ZUM4 889 aa13.02□□□□□ -0.33
RFC4-214ENST00000494047 SH3RF1Q7Z6J0 888 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms