RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SPDYE3A6NKU9 549 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 NOP56O00567 594 aaKnown RBP6.17□□□□□ -1.42
VPS13A-212ENST00000493341 OPA1O60313 960 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 KPNA6O60684 536 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 NEK2P51955 445 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 ERVK-24P63145 666 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 ZNF460Q14592 562 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 ZBTB37Q5TC79 503 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 PKN3Q6P5Z2 889 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 C14orf80Q86SX3 495 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 HID1Q8IV36 788 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 MYO1HQ8N1T3 1032 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 SLC7A14Q8TBB6 771 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 BAHD1Q8TBE0 780 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-212ENST00000493341 SLC52A2Q9HAB3 445 aa6.17□□□□□ -1.42
VPS13A-212ENST00000493341 LOC100289279A0A1B0GTE1 492 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 FANCGO15287 622 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 DDX3YO15523 660 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 DLGAP3O95886 979 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 KRT18P05783 430 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 ATF3P18847 181 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 NKG7Q16617 165 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 SLC6A19Q695T7 634 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 CCSAPQ6IQ19 270 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 BRAPQ7Z569 592 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 CHPFQ8IZ52 775 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 BVESQ8NE79 360 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 OSBP2Q969R2 916 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 RELTQ969Z4 430 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 MDFIQ99750 246 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 MKRN2Q9H000 416 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 KLHL25Q9H0H3 589 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 FBRSQ9HAH7 460 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 TRIM39Q9HCM9 518 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 GGA1Q9UJY5 639 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 PCDHGC5Q9Y5F6 944 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 PHLDB1Q86UU1 1377 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 AKAP10O43572 662 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 CAND2O75155 1236 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 PPM1BO75688 479 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 JMJD7P0C870 316 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 AFF1P51825 1210 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 SUZ12Q15022 739 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 HP1BP3Q5SSJ5 553 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 RNF219Q5W0B1 726 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 NECAB2Q7Z6G3 386 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 FGD2Q7Z6J4 655 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 WFDC8Q8IUA0 241 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 MRPL41Q8IXM3 137 aaKnown RBP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 KLHL23Q8NBE8 558 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 ADCY4Q8NFM4 1077 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS13A-212ENST00000493341 GBP3Q9H0R5 595 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 AASDHPPTQ9NRN7 309 aa6.16□□□□□ -1.42
VPS13A-212ENST00000493341 PLIN1O60240 522 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 PPFIA3O75145 1194 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 TMPRSS15P98073 1019 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 ID3Q02535 119 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 STAT4Q14765 748 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 CDC37L1Q7L3B6 337 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 ZNF507Q8TCN5 953 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 XAGE3Q8WTP9 111 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 SMARCC1Q92922 1105 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-212ENST00000493341 SENP2Q9HC62 589 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 AKT3Q9Y243 479 aa6.15□□□□□ -1.42
VPS13A-212ENST00000493341 BLACEA4D250 179 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 GPR39O43194 453 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 GFRA3O60609 400 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 LILRB5O75023 590 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 EIF3JO75822 258 aaKnown RBP6.15□□□□□ -1.43
VPS13A-212ENST00000493341 C6orf222P0C671 652 aaPredicted RBP6.15□□□□□ -1.43
VPS13A-212ENST00000493341 UBE4AQ14139 1066 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 TRIM61Q5EBN2 209 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 PPP4R4Q6NUP7 873 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 GALNT11Q8NCW6 608 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 KIFC2Q96AC6 838 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 YIPF4Q9BSR8 244 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 STARD13Q9Y3M8 1113 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 ZNF451Q9Y4E5 1061 aa6.15□□□□□ -1.43
VPS13A-212ENST00000493341 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-212ENST00000493341 BRINP1O60477 761 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 ALBP02768 609 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 CD247P20963 164 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 GABREP78334 506 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 CFAP100Q494V2 611 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 ZNF513Q8N8E2 541 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-212ENST00000493341 USP7Q93009 1102 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 TTC1Q99614 292 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 MTFR1LQ9H019 292 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 LRRC4BQ9NT99 713 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 GDF2Q9UK05 429 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-212ENST00000493341 PPP1R9AQ9ULJ8 1098 aa6.14□□□□□ -1.43
VPS13A-212ENST00000493341 NSFL1CQ9UNZ2 370 aaKnown RBP6.14□□□□□ -1.43
VPS13A-212ENST00000493341 EFCAB14O75071 495 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 ADAM11O75078 769 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 ASLP04424 464 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 NTF4P34130 210 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 SETDB1Q15047 1291 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 DHCR24Q15392 516 aa6.13□□□□□ -1.43
VPS13A-212ENST00000493341 SF1Q15637 639 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms