RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CDK8P49336 464 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 ZNF772Q68DY9 489 aaPredicted RBP24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 OLFM4Q6UX06 510 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 CCDC186Q7Z3E2 898 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 STAG2Q8N3U4 1231 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 DAGLAQ9Y4D2 1042 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 MAD2L2Q9UI95 211 aa24.19■■□□□ 1.46
CCDC88B-208ENST00000492980 WNT7AO00755 349 aa24.18■■□□□ 1.46
CCDC88B-208ENST00000492980 FLAD1Q8NFF5 587 aa24.18■■□□□ 1.46
CCDC88B-208ENST00000492980 TMEM47Q9BQJ4 181 aa24.18■■□□□ 1.46
CCDC88B-208ENST00000492980 CSRNP2Q9H175 543 aa24.18■■□□□ 1.46
CCDC88B-208ENST00000492980 PYCARDQ9ULZ3 195 aa24.18■■□□□ 1.46
CCDC88B-208ENST00000492980 MMP10P09238 476 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 NLRP5P59047 1200 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 MDM2Q00987 491 aaPredicted RBP24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 NOLC1Q14978 699 aaKnown RBP eCLIP24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 C17orf53Q8N3J3 647 aaPredicted RBP24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 ALDH1B1P30837 517 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 PDE6BP35913 854 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 GNAQP50148 359 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 ISM2Q6H9L7 571 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 KIAA1524Q8TCG1 905 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 EYA3Q99504 573 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 SUGT1Q9Y2Z0 365 aa24.17■■□□□ 1.46
CCDC88B-208ENST00000492980 BMP15O95972 392 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 TTC38Q5R3I4 469 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 FOXP4Q8IVH2 680 aaPredicted RBP24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 ZC3H12CQ9C0D7 883 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 SPTLC3Q9NUV7 552 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 STX8Q9UNK0 236 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 PARP3Q9Y6F1 533 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 FOXN1O15353 648 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 POLR2DO15514 142 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 NCAPHQ15003 741 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 SLC35G1Q2M3R5 365 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 CERS5Q8N5B7 392 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 NEDD1Q8NHV4 660 aa24.16■■□□□ 1.46
CCDC88B-208ENST00000492980 CCDC144BQ3MJ40 725 aa24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 DPP8Q6V1X1 898 aaPredicted RBP24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 USP49Q70CQ1 688 aa24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 SH3GLB2Q9NR46 395 aa24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 SERTAD1Q9UHV2 236 aa24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 PCDHA5Q9Y5H7 936 aa24.15■■□□□ 1.46
CCDC88B-208ENST00000492980 ADAMTS3O15072 1205 aa24.14■■□□□ 1.46
CCDC88B-208ENST00000492980 MASTLQ96GX5 879 aa24.14■■□□□ 1.46
CCDC88B-208ENST00000492980 HOOK1Q9UJC3 728 aaKnown RBP24.14■■□□□ 1.46
CCDC88B-208ENST00000492980 TNS1Q9HBL0 1735 aaKnown RBP24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 PALM3A6NDB9 673 aaPredicted RBP24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 SMTNL1A8MU46 457 aa24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 ZNF174Q15697 407 aa24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 FERMT2Q96AC1 680 aa24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.14■■□□□ 1.45
CCDC88B-208ENST00000492980 IKBKBO14920 756 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 ACTN4O43707 911 aaKnown RBP24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 CALML3P27482 149 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 POSTNQ15063 836 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 PIK3AP1Q6ZUJ8 805 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 GPKOWQ92917 476 aaPredicted RBP eCLIP24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 CYTH3O43739 400 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 TRAPPC10P48553 1259 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 DOK7Q18PE1 504 aa24.13■■□□□ 1.45
CCDC88B-208ENST00000492980 ADAMTSL1Q8N6G6 1762 aa24.12■■□□□ 1.45
CCDC88B-208ENST00000492980 F8W031 263 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-208ENST00000492980 ATP2C1P98194 919 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-208ENST00000492980 LRMPQ12912 555 aa24.12■■□□□ 1.45
CCDC88B-208ENST00000492980 R3HCC1Q9Y3T6 440 aaKnown RBP24.12■■□□□ 1.45
CCDC88B-208ENST00000492980 PRR29P0C7W0 189 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 MSL1Q68DK7 614 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 BLIDQ8IZY5 108 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 PDILTQ8N807 584 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 MTMR7Q9Y216 660 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 TPM4P67936 248 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 NT5DC1Q5TFE4 455 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 TYW1BQ6NUM6 668 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 LZTS2Q9BRK4 669 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 MXD3Q9BW11 206 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 PCDHA4Q9UN74 947 aa24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 TTF2Q9UNY4 1162 aaKnown RBP24.11■■□□□ 1.45
CCDC88B-208ENST00000492980 BMP6P22004 513 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 NOVP48745 357 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 PTGDRQ13258 359 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 CACTINQ8WUQ7 758 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 EPSTI1Q96J88 318 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 MAN1B1Q9UKM7 699 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 RGPD3A6NKT7 1758 aaPredicted RBP24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 RGPD4Q7Z3J3 1758 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 A0A087X0B3 334 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 TERF1P54274 439 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 PICALMQ13492 652 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 WWC2Q6AWC2 1192 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 KANK3Q6NY19 840 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 RASGRP2Q7LDG7 609 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 CEP95Q96GE4 821 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 HSD3B7Q9H2F3 369 aa24.1■■□□□ 1.45
CCDC88B-208ENST00000492980 PLIN4Q96Q06 1357 aa24.09■■□□□ 1.45
CCDC88B-208ENST00000492980 TOP1P11387 765 aaKnown RBP24.09■■□□□ 1.45
CCDC88B-208ENST00000492980 SARSP49591 514 aaKnown RBP24.09■■□□□ 1.45
CCDC88B-208ENST00000492980 GRAMD1CQ8IYS0 662 aa24.09■■□□□ 1.45
CCDC88B-208ENST00000492980 SYMPKQ92797 1274 aaKnown RBP24.09■■□□□ 1.45
CCDC88B-208ENST00000492980 TMX4Q9H1E5 349 aaPredicted RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms