RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 USP17L20D6RJB6 530 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 CDK8P49336 464 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 ATP2B2Q01814 1243 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 USP17L24Q0WX57 530 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 PDE3AQ14432 1141 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 C12orf60Q5U649 245 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 PLEKHH3Q7Z736 793 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 C7orf61Q8IZ16 206 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 TRPV1Q8NER1 839 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 ATG4CQ96DT6 458 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 NUP88Q99567 741 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-211ENST00000491581 TANGO6Q9C0B7 1094 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 DCTPP1Q9H773 170 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 CABP5Q9NP86 173 aa10.75□□□□□ -0.69
HDAC3-211ENST00000491581 ZMYND8Q9ULU4 1186 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-211ENST00000491581 PLXNA1Q9UIW2 1896 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 SOX1O00570 391 aaPredicted RBP10.74□□□□□ -0.69
HDAC3-211ENST00000491581 PRDM1O75626 825 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 EEF2P13639 858 aaKnown RBP10.74□□□□□ -0.69
HDAC3-211ENST00000491581 CYP2C19P33261 490 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 PRAMEF19Q5SWL8 479 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 MAP3K21Q5TCX8 1036 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 CCDC129Q6ZRS4 1044 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 STRBPQ96SI9 672 aaKnown RBP10.74□□□□□ -0.69
HDAC3-211ENST00000491581 NUDT12Q9BQG2 462 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 MOV10L1Q9BXT6 1211 aaKnown RBP10.74□□□□□ -0.69
HDAC3-211ENST00000491581 HMX1Q9NP08 348 aaPredicted RBP10.74□□□□□ -0.69
HDAC3-211ENST00000491581 INCENPQ9NQS7 918 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 ECHDC1Q9NTX5 307 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 STAP2Q9UGK3 403 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 PFASO15067 1338 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 RPTORQ8N122 1335 aa10.74□□□□□ -0.69
HDAC3-211ENST00000491581 GSG1L2A8MUP6 293 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 MINDY4BA8MYZ0 360 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 RAD21O60216 631 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 ZKSCAN1P17029 563 aaPredicted RBP10.73□□□□□ -0.69
HDAC3-211ENST00000491581 ICA1Q05084 483 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 UBE3CQ15386 1083 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 LHX8Q68G74 356 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 RASGRP2Q7LDG7 609 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 NKX2-3Q8TAU0 364 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 PI4K2BQ8TCG2 481 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 TACC3Q9Y6A5 838 aa10.73□□□□□ -0.69
HDAC3-211ENST00000491581 SZT2Q5T011 3432 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 EVI5O60447 810 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 COBLO75128 1261 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 PTPREP23469 700 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 MAPK4P31152 587 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 RRP1P56182 461 aaKnown RBP10.72□□□□□ -0.69
HDAC3-211ENST00000491581 MAP2K5Q13163 448 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 PLS1Q14651 629 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 LBX2Q6XYB7 198 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 TMEM179Q6ZVK1 233 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 C16orf86Q6ZW13 317 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 CCAR1Q8IX12 1150 aaKnown RBP10.72□□□□□ -0.69
HDAC3-211ENST00000491581 KBTBD3Q8NAB2 608 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.72□□□□□ -0.692e-6■■■■□ 21.7
HDAC3-211ENST00000491581 PRO3102Q9H379 93 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 CWC22Q9HCG8 908 aaKnown RBP10.72□□□□□ -0.69
HDAC3-211ENST00000491581 GINM1Q9NU53 330 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 RABGAP1Q9Y3P9 1069 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 ZNF236Q9UL36 1845 aa10.72□□□□□ -0.69
HDAC3-211ENST00000491581 FOXP2O15409 715 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 GPAA1O43292 621 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 FLOT1O75955 427 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 TAL1P17542 331 aaPredicted RBP10.71□□□□□ -0.69
HDAC3-211ENST00000491581 ERCC3P19447 782 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 RASA1P20936 1047 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 RGS2P41220 211 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 USP14P54578 494 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 COG2Q14746 738 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 TMEM132BQ14DG7 1078 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 LRRC26Q2I0M4 334 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 FAM83BQ5T0W9 1011 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 LRCH3Q96II8 777 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 APBA2Q99767 749 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 VCPKMTQ9H867 229 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 ATP8A2Q9NTI2 1148 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 OGDHLQ9ULD0 1010 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 TMX2Q9Y320 296 aa10.71□□□□□ -0.69
HDAC3-211ENST00000491581 SALL3Q9BXA9 1300 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 RBAK-RBAKDNI3L0D1 243 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 RNF113AO15541 343 aaKnown RBP10.7□□□□□ -0.7
HDAC3-211ENST00000491581 IGSF3O75054 1194 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 PGK2P07205 417 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 ADORA2AP29274 412 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 CNGA1P29973 690 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 SLC4A3P48751 1232 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 IRX5P78411 483 aaPredicted RBP10.7□□□□□ -0.7
HDAC3-211ENST00000491581 GRB14Q14449 540 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 FAM47AQ5JRC9 791 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 NECAB2Q7Z6G3 386 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 NCAPG2Q86XI2 1143 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 CERS3Q8IU89 383 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 LRRC47Q8N1G4 583 aaKnown RBP10.7□□□□□ -0.7
HDAC3-211ENST00000491581 SOCS4Q8WXH5 440 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 APPBP2Q92624 585 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 LENG1Q96BZ8 264 aaPredicted RBP10.7□□□□□ -0.7
HDAC3-211ENST00000491581 GCC1Q96CN9 775 aa10.7□□□□□ -0.7
HDAC3-211ENST00000491581 HTATIP2Q9BUP3 242 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms