RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 CACNB2Q08289 660 aaPredicted RBP18.94■□□□□ 0.62
SMPD4-220ENST00000491319 UBE3CQ15386 1083 aa18.94■□□□□ 0.62
SMPD4-220ENST00000491319 KIAA1755Q5JYT7 1200 aa18.94■□□□□ 0.62
SMPD4-220ENST00000491319 TRMT44Q8IYL2 757 aaKnown RBP18.94■□□□□ 0.62
SMPD4-220ENST00000491319 PLXNA1Q9UIW2 1896 aa18.94■□□□□ 0.62
SMPD4-220ENST00000491319 CCND3P30281 292 aaPredicted RBP18.93■□□□□ 0.62
SMPD4-220ENST00000491319 MAP2K5Q13163 448 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 C12orf60Q5U649 245 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 TANGO6Q9C0B7 1094 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 PUS7LQ9H0K6 701 aaKnown RBP18.93■□□□□ 0.62
SMPD4-220ENST00000491319 PRO3102Q9H379 93 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 OGDHLQ9ULD0 1010 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 SLC4A4Q9Y6R1 1079 aa18.93■□□□□ 0.62
SMPD4-220ENST00000491319 USP17L12C9JPN9 530 aa18.92■□□□□ 0.62
SMPD4-220ENST00000491319 USP17L21D6R901 530 aa18.92■□□□□ 0.62
SMPD4-220ENST00000491319 ICA1Q05084 483 aa18.92■□□□□ 0.62
SMPD4-220ENST00000491319 ECHDC1Q9NTX5 307 aa18.92■□□□□ 0.62
SMPD4-220ENST00000491319 FLRT1Q9NZU1 646 aa18.92■□□□□ 0.62
SMPD4-220ENST00000491319 SLC15A5A6NIM6 579 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 GLRX3O76003 335 aaKnown RBP18.91■□□□□ 0.62
SMPD4-220ENST00000491319 PTPREP23469 700 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 CDK8P49336 464 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 GRB14Q14449 540 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 TSHZ3Q63HK5 1081 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 C16orf86Q6ZW13 317 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 SIAH1Q8IUQ4 282 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 AMOTL1Q8IY63 956 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 NBPF3Q9H094 633 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 IVNS1ABPQ9Y6Y0 642 aa18.91■□□□□ 0.62
SMPD4-220ENST00000491319 COG2Q14746 738 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 ZSCAN25Q6NSZ9 544 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 C7orf61Q8IZ16 206 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 SPICE1Q8N0Z3 855 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 DDRGK1Q96HY6 314 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 C11orf49Q9H6J7 331 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 DCTPP1Q9H773 170 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 ARHGEF10LQ9HCE6 1279 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 SZT2Q5T011 3432 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 PFASO15067 1338 aa18.9■□□□□ 0.62
SMPD4-220ENST00000491319 CTR9Q6PD62 1173 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 NPLOC4Q8TAT6 608 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 LPAR1Q92633 364 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 CCDC17Q96LX7 622 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 MOV10L1Q9BXT6 1211 aaKnown RBP18.89■□□□□ 0.61
SMPD4-220ENST00000491319 VCPKMTQ9H867 229 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 TMX2Q9Y320 296 aa18.89■□□□□ 0.61
SMPD4-220ENST00000491319 HOXC6P09630 235 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 LHX8Q68G74 356 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 KBTBD3Q8NAB2 608 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 SPATC1LQ9H0A9 340 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 SH2D4AQ9H788 454 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 HOXC10Q9NYD6 342 aa18.88■□□□□ 0.61
SMPD4-220ENST00000491319 SMCHD1A6NHR9 2005 aa18.87■□□□□ 0.61
SMPD4-220ENST00000491319 FLOT1O75955 427 aa18.87■□□□□ 0.61
SMPD4-220ENST00000491319 MFSD14CQ5VZR4 134 aa18.87■□□□□ 0.61
SMPD4-220ENST00000491319 ATG4CQ96DT6 458 aa18.87■□□□□ 0.61
SMPD4-220ENST00000491319 GPATCH3Q96I76 525 aa18.87■□□□□ 0.61
SMPD4-220ENST00000491319 STRBPQ96SI9 672 aaKnown RBP18.87■□□□□ 0.61
SMPD4-220ENST00000491319 ARPP21Q9UBL0 812 aaPredicted RBP18.87■□□□□ 0.61
SMPD4-220ENST00000491319 ZMYND8Q9ULU4 1186 aaPredicted RBP18.87■□□□□ 0.61
SMPD4-220ENST00000491319 WDR46O15213 610 aaKnown RBP18.86■□□□□ 0.61
SMPD4-220ENST00000491319 EEF2P13639 858 aaKnown RBP18.86■□□□□ 0.61
SMPD4-220ENST00000491319 ERCC3P19447 782 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 ADORA2AP29274 412 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 DSG3P32926 999 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 ATP2B2Q01814 1243 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 SAMD1Q6SPF0 538 aaPredicted RBP18.86■□□□□ 0.61
SMPD4-220ENST00000491319 MB21D1Q8N884 522 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 OSBP2Q969R2 916 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 STAP2Q9UGK3 403 aa18.86■□□□□ 0.61
SMPD4-220ENST00000491319 ROBO3Q96MS0 1386 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 GSG1L2A8MUP6 293 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 COL6A1P12109 1028 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 CYP2C19P33261 490 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 PLS1Q14651 629 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 STK11IPQ8N1F8 1099 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 SHCBP1Q8NEM2 672 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 APPBP2Q92624 585 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 LAMA3Q16787 3333 aa18.85■□□□□ 0.61
SMPD4-220ENST00000491319 SYN1P17600 705 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 DPP9Q86TI2 863 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 TRPV1Q8NER1 839 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.84■□□□□ 0.61
SMPD4-220ENST00000491319 KANSL2Q9H9L4 492 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 EPB41L4AQ9HCS5 686 aaPredicted RBP18.84■□□□□ 0.61
SMPD4-220ENST00000491319 FBXO28Q9NVF7 368 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 PCDHB15Q9Y5E8 787 aa18.84■□□□□ 0.61
SMPD4-220ENST00000491319 M0R2C6 588 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 RNF113AO15541 343 aaKnown RBP18.83■□□□□ 0.6
SMPD4-220ENST00000491319 GPAA1O43292 621 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 STRNO43815 780 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 IGHA2P01877 340 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 CYBAP13498 195 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 CNGA1P29973 690 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 SBK1Q52WX2 424 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 NCAPG2Q86XI2 1143 aa18.83■□□□□ 0.6
SMPD4-220ENST00000491319 DDX20Q9UHI6 824 aaKnown RBP18.83■□□□□ 0.6
SMPD4-220ENST00000491319 MCM3APO60318 1980 aa18.82■□□□□ 0.6
SMPD4-220ENST00000491319 LTBP2Q14767 1821 aa18.82■□□□□ 0.6
SMPD4-220ENST00000491319 A0A1W2PPC1 479 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms