RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 EVI5O60447 810 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 GLRX3O76003 335 aaKnown RBP16.42■□□□□ 0.22
COL6A3-211ENST00000491233 ICA1Q05084 483 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 C12orf60Q5U649 245 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 DDRGK1Q96HY6 314 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 PUS7LQ9H0K6 701 aaKnown RBP16.42■□□□□ 0.22
COL6A3-211ENST00000491233 ARHGEF10LQ9HCE6 1279 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 RBM27Q9P2N5 1060 aaKnown RBP16.42■□□□□ 0.22
COL6A3-211ENST00000491233 OGDHLQ9ULD0 1010 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 SLC4A4Q9Y6R1 1079 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 TRIOBPQ9H2D6 2365 aa16.42■□□□□ 0.22
COL6A3-211ENST00000491233 USP17L12C9JPN9 530 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 USP17L21D6R901 530 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 PTPREP23469 700 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 CACNB2Q08289 660 aaPredicted RBP16.41■□□□□ 0.22
COL6A3-211ENST00000491233 KIAA1755Q5JYT7 1200 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 TSHZ3Q63HK5 1081 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 C16orf86Q6ZW13 317 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 GPATCH3Q96I76 525 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 DCTPP1Q9H773 170 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 IVNS1ABPQ9Y6Y0 642 aa16.41■□□□□ 0.22
COL6A3-211ENST00000491233 SLC15A5A6NIM6 579 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 CCND3P30281 292 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-211ENST00000491233 CDK8P49336 464 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 MNX1P50219 401 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-211ENST00000491233 GRB14Q14449 540 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 LPAR1Q92633 364 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 CCDC17Q96LX7 622 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 NBPF3Q9H094 633 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 SH2D4AQ9H788 454 aa16.4■□□□□ 0.22
COL6A3-211ENST00000491233 COG2Q14746 738 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 CTR9Q6PD62 1173 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 SIAH1Q8IUQ4 282 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 C7orf61Q8IZ16 206 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 SPICE1Q8N0Z3 855 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 KBTBD3Q8NAB2 608 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 MOV10L1Q9BXT6 1211 aaKnown RBP16.39■□□□□ 0.21
COL6A3-211ENST00000491233 PRO3102Q9H379 93 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 C11orf49Q9H6J7 331 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 VCPKMTQ9H867 229 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 FLRT1Q9NZU1 646 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 ARPP21Q9UBL0 812 aaPredicted RBP16.39■□□□□ 0.21
COL6A3-211ENST00000491233 TMX2Q9Y320 296 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 MYH4Q9Y623 1939 aa16.39■□□□□ 0.21
COL6A3-211ENST00000491233 HOXC6P09630 235 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 MFSD14CQ5VZR4 134 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 APPBP2Q92624 585 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 ATG4CQ96DT6 458 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 STRBPQ96SI9 672 aaKnown RBP16.38■□□□□ 0.21
COL6A3-211ENST00000491233 SPATC1LQ9H0A9 340 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 HOXC10Q9NYD6 342 aa16.38■□□□□ 0.21
COL6A3-211ENST00000491233 ZNFX1Q9P2E3 1918 aaKnown RBP16.37■□□□□ 0.21
COL6A3-211ENST00000491233 WDR46O15213 610 aaKnown RBP16.37■□□□□ 0.21
COL6A3-211ENST00000491233 FLOT1O75955 427 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 DSG3P32926 999 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 ATP2B2Q01814 1243 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 SAMD1Q6SPF0 538 aaPredicted RBP16.37■□□□□ 0.21
COL6A3-211ENST00000491233 NPLOC4Q8TAT6 608 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 PFASO15067 1338 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 PLXNA1Q9UIW2 1896 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 ROBO3Q96MS0 1386 aa16.37■□□□□ 0.21
COL6A3-211ENST00000491233 EEF2P13639 858 aaKnown RBP16.36■□□□□ 0.21
COL6A3-211ENST00000491233 ERCC3P19447 782 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 PLS1Q14651 629 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 LHX8Q68G74 356 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 MB21D1Q8N884 522 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 SHCBP1Q8NEM2 672 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 OSBP2Q969R2 916 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 ZMYND8Q9ULU4 1186 aaPredicted RBP16.36■□□□□ 0.21
COL6A3-211ENST00000491233 PCDHB15Q9Y5E8 787 aa16.36■□□□□ 0.21
COL6A3-211ENST00000491233 GSG1L2A8MUP6 293 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 RNF113AO15541 343 aaKnown RBP16.35■□□□□ 0.21
COL6A3-211ENST00000491233 GPAA1O43292 621 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 ADORA2AP29274 412 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 SBK1Q52WX2 424 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 DPP9Q86TI2 863 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 STK11IPQ8N1F8 1099 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 KANSL2Q9H9L4 492 aa16.35■□□□□ 0.21
COL6A3-211ENST00000491233 EPB41L4AQ9HCS5 686 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-211ENST00000491233 MINDY4BA8MYZ0 360 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 M0R2C6 588 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 ZFYP08048 801 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-211ENST00000491233 COL6A1P12109 1028 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 CYP2C19P33261 490 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 NCAPG2Q86XI2 1143 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL6A3-211ENST00000491233 GOPCQ9HD26 462 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 FBXO28Q9NVF7 368 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 STAP2Q9UGK3 403 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 DDX20Q9UHI6 824 aaKnown RBP16.34■□□□□ 0.21
COL6A3-211ENST00000491233 TTC41PQ6P2S7 1318 aa16.34■□□□□ 0.21
COL6A3-211ENST00000491233 A0A1W2PPC1 479 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 STRNO43815 780 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 RAD21O60216 631 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 CYBAP13498 195 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 SYN1P17600 705 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 RASA1P20936 1047 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 CNGA1P29973 690 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 TDO2P48775 406 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms