RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 GSG1L2A8MUP6 293 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 PATL2C9JE40 543 aaKnown RBP8.41□□□□□ -1.06
VPS50-218ENST00000485994 USP17L12C9JPN9 530 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 USP17L21D6R901 530 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 PRKAB2O43741 272 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 FMNL1O95466 1100 aaPredicted RBP8.41□□□□□ -1.06
VPS50-218ENST00000485994 MX1P20591 662 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 MTMR2Q13614 643 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 CATSPERGQ6ZRH7 1159 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 TMEM179Q6ZVK1 233 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 AMOTL1Q8IY63 956 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 SMCR8Q8TEV9 937 aaPredicted RBP8.41□□□□□ -1.06
VPS50-218ENST00000485994 YTHDC1Q96MU7 727 aaKnown RBP8.41□□□□□ -1.06
VPS50-218ENST00000485994 P2RX7Q99572 595 aaKnown RBP8.41□□□□□ -1.06
VPS50-218ENST00000485994 ARHGAP39Q9C0H5 1083 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 OSBPL3Q9H4L5 887 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 LHX6Q9UPM6 363 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 PTCH2Q9Y6C5 1203 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 SLC4A4Q9Y6R1 1079 aa8.41□□□□□ -1.06
VPS50-218ENST00000485994 RBBP6Q7Z6E9 1792 aaKnown RBP8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L15C9J2P7 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L13C9JLJ4 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L11C9JVI0 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L18D6R9N7 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L22D6RA61 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L17D6RBQ6 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L19D6RCP7 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L20D6RJB6 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 GRK4P32298 578 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 CDK8P49336 464 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 PDE1AP54750 535 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 HERVK_113P62684 666 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 USP17L24Q0WX57 530 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 SLFNL1Q499Z3 407 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 SLC9C1Q4G0N8 1177 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 ZMYM1Q5SVZ6 1142 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 SIAH1Q8IUQ4 282 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 COA7Q96BR5 231 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 EVI5LQ96CN4 794 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 HOXC10Q9NYD6 342 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 RBPJLQ9UBG7 517 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 ARPP21Q9UBL0 812 aaPredicted RBP8.4□□□□□ -1.06
VPS50-218ENST00000485994 GJD2Q9UKL4 321 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 TMX2Q9Y320 296 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 RABGAP1Q9Y3P9 1069 aa8.4□□□□□ -1.06
VPS50-218ENST00000485994 MYH8P13535 1937 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 NAV1Q8NEY1 1877 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 IGHDP01880 384 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 CHGBP05060 677 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 XRCC5P13010 732 aaKnown RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 IRX3P78415 501 aaPredicted RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 SEPT2Q15019 361 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 RAB3GAP1Q15042 981 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 SHROOM1Q2M3G4 852 aaPredicted RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 IFNL3Q8IZI9 196 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 ANKRD13CQ8N6S4 541 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 GPRC5AQ8NFJ5 357 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 RAET1EQ8TD07 263 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 ACER1Q8TDN7 264 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 OTUD7AQ8TE49 926 aaPredicted RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 LPAR1Q92633 364 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 KANSL2Q9H9L4 492 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 ZNF287Q9HBT7 754 aa8.39□□□□□ -1.07
VPS50-218ENST00000485994 SUPT16HQ9Y5B9 1047 aaKnown RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 TNRC18O15417 2968 aaPredicted RBP8.39□□□□□ -1.07
VPS50-218ENST00000485994 MYPNQ86TC9 1320 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 A0A1W2PRG0 241 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 C2orf72A6NCS6 295 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 RIOK3O14730 519 aaKnown RBP8.38□□□□□ -1.07
VPS50-218ENST00000485994 GPAA1O43292 621 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 CYP2D6P10635 497 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 MAPK4P31152 587 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 FLT3LGP49771 235 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 SOX10P56693 466 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 UBXN2AP68543 259 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 NUCB1Q02818 461 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 COG2Q14746 738 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 ALX1Q15699 326 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 Q3C1V9 767 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 NKX2-3Q8TAU0 364 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 MKL1Q969V6 931 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 DYNLL2Q96FJ2 89 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 NACAP1Q9BZK3 213 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 BCL11AQ9H165 835 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 SH2D4AQ9H788 454 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 HELLSQ9NRZ9 838 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 NYAP2Q9P242 653 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 SYNPO2Q9UMS6 1093 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 GABRQQ9UN88 632 aa8.38□□□□□ -1.07
VPS50-218ENST00000485994 ROBO3Q96MS0 1386 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 TNPO2O14787 897 aaKnown RBP8.37□□□□□ -1.07
VPS50-218ENST00000485994 ADCY3O60266 1144 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 GJB1P08034 283 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 AKR1B1P15121 316 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 VCAM1P19320 739 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 ERVK-9P63128 1117 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 ERVK-24P63145 666 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 PRKCZQ05513 592 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 SLC4A8Q2Y0W8 1093 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 TSHZ3Q63HK5 1081 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms