RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 DEXIO95424 95 aa16.77■□□□□ 0.28
COL4A6-206ENST00000477085 GOLGA8HP0CJ92 632 aa16.77■□□□□ 0.28
COL4A6-206ENST00000477085 TRIM22Q8IYM9 498 aa16.77■□□□□ 0.28
COL4A6-206ENST00000477085 GPC2Q8N158 579 aa16.77■□□□□ 0.28
COL4A6-206ENST00000477085 LRRC47Q8N1G4 583 aaKnown RBP16.77■□□□□ 0.28
COL4A6-206ENST00000477085 RGS22Q8NE09 1264 aa16.77■□□□□ 0.28
COL4A6-206ENST00000477085 USP17L5A8MUK1 530 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 TTLL1O95922 423 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 KIF23Q02241 960 aaPredicted RBP16.77■□□□□ 0.27
COL4A6-206ENST00000477085 RASA3Q14644 834 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 USP17L2Q6R6M4 530 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 TMEM87AQ8NBN3 555 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 GPT2Q8TD30 523 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 TEPSINQ96N21 525 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.77■□□□□ 0.27
COL4A6-206ENST00000477085 GPRC5DQ9NZD1 345 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 KCNJ14Q9UNX9 436 aa16.77■□□□□ 0.27
COL4A6-206ENST00000477085 KIF5BP33176 963 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 SEPT2Q15019 361 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 KIF4BQ2VIQ3 1234 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 TRPM4Q8TD43 1214 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 TRIM34Q9BYJ4 488 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 CPVLQ9H3G5 476 aa16.76■□□□□ 0.27
COL4A6-206ENST00000477085 HERC5Q9UII4 1024 aaKnown RBP16.76■□□□□ 0.27
COL4A6-206ENST00000477085 DICER1Q9UPY3 1922 aaKnown RBP16.76■□□□□ 0.27
COL4A6-206ENST00000477085 FIBPO43427 364 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 DDNO94850 711 aaPredicted RBP16.75■□□□□ 0.27
COL4A6-206ENST00000477085 SNHG28P0DPA3 235 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 PDHBP11177 359 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 EEF2P13639 858 aaKnown RBP16.75■□□□□ 0.27
COL4A6-206ENST00000477085 NCLP19338 710 aaKnown RBP16.75■□□□□ 0.27
COL4A6-206ENST00000477085 EPS15P42566 896 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 HIRAP54198 1017 aaPredicted RBP16.75■□□□□ 0.27
COL4A6-206ENST00000477085 MAP3K10Q02779 954 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 MIGA2Q7L4E1 593 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 FTOQ9C0B1 505 aaKnown RBP eCLIP16.75■□□□□ 0.27
COL4A6-206ENST00000477085 RNF181Q9P0P0 153 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 HACL1Q9UJ83 578 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 MYH8P13535 1937 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 TCHHQ07283 1943 aa16.75■□□□□ 0.27
COL4A6-206ENST00000477085 GH2P01242 217 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 ABCB5Q2M3G0 1257 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 PIBF1Q8WXW3 757 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 WASF1Q92558 559 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 MKL1Q969V6 931 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 TBC1D12O60347 775 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 C9orf131Q5VYM1 1079 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 TMEM179Q6ZVK1 233 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 KANSL2Q9H9L4 492 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 VPS54Q9P1Q0 977 aa16.74■□□□□ 0.27
COL4A6-206ENST00000477085 KLRF2D3W0D1 207 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 H7C1D1 291 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 MMP1P03956 469 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 PARP1P09874 1014 aaKnown RBP16.73■□□□□ 0.27
COL4A6-206ENST00000477085 PTMSP20962 102 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 KRT85P78386 507 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
COL4A6-206ENST00000477085 FRMPD2Q68DX3 1309 aaPredicted RBP16.73■□□□□ 0.27
COL4A6-206ENST00000477085 BTBD18B2RXH4 712 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 U2AF2P26368 475 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 GNAQP50148 359 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 ATP2B2Q01814 1243 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 AKAP17AQ02040 695 aaKnown RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 NPY5RQ15761 445 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 PFKFB3Q16875 520 aaPredicted RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 OXER1Q8TDS5 423 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 LEO1Q8WVC0 666 aaPredicted RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 USP28Q96RU2 1077 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 UBA5Q9GZZ9 404 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 DDX49Q9Y6V7 483 aaKnown RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 A0A1W2PRG0 241 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 PHF20L1A8MW92 1017 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 ADAMTS3O15072 1205 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 SCG2P13521 617 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 TRIM29Q14134 588 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 KLHL40Q2TBA0 621 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 SKOR2Q2VWA4 1001 aaPredicted RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 ANGEL2Q5VTE6 544 aaKnown RBP16.72■□□□□ 0.27
COL4A6-206ENST00000477085 PHF20Q9BVI0 1012 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 DEFB129Q9H1M3 183 aa16.72■□□□□ 0.27
COL4A6-206ENST00000477085 TNNI2P48788 182 aa16.71■□□□□ 0.27
COL4A6-206ENST00000477085 CEBPZQ03701 1054 aaKnown RBP16.71■□□□□ 0.27
COL4A6-206ENST00000477085 GZF1Q9H116 711 aaPredicted RBP16.71■□□□□ 0.27
COL4A6-206ENST00000477085 ICA1Q05084 483 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 ZNF543Q08ER8 600 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 NR5A1Q13285 461 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 MYSM1Q5VVJ2 828 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 TTBK2Q6IQ55 1244 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 TYW1BQ6NUM6 668 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 BRAPQ7Z569 592 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 DIS3L2Q8IYB7 885 aaKnown RBP16.7■□□□□ 0.26
COL4A6-206ENST00000477085 LZTS2Q9BRK4 669 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 SPZ1Q9BXG8 430 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 GPCPD1Q9NPB8 672 aa16.7■□□□□ 0.26
COL4A6-206ENST00000477085 TNFAIP1Q13829 316 aa16.69■□□□□ 0.26
COL4A6-206ENST00000477085 NBPF12Q5TAG4 269 aaPredicted RBP16.69■□□□□ 0.26
COL4A6-206ENST00000477085 PRAMEF18Q5VWM3 479 aa16.69■□□□□ 0.26
COL4A6-206ENST00000477085 PGBD1Q96JS3 809 aa16.69■□□□□ 0.26
COL4A6-206ENST00000477085 RIOX1Q9H6W3 641 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms