RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 GRIN1Q05586 938 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 SLC35G1Q2M3R5 365 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 DPCR1Q3MIW9 517 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 USP17L1Q7RTZ2 530 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 METTL16Q86W50 562 aaKnown RBP11.26□□□□□ -0.61
USP39-214ENST00000474572 PIBF1Q8WXW3 757 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 EYA3Q99504 573 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 TMEM47Q9BQJ4 181 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 LZTS2Q9BRK4 669 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 MRIQ9BWK5 157 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 SPZ1Q9BXG8 430 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 ZC3H12CQ9C0D7 883 aaKnown RBP11.26□□□□□ -0.61
USP39-214ENST00000474572 NAT10Q9H0A0 1025 aaKnown RBP11.26□□□□□ -0.61
USP39-214ENST00000474572 KCNH3Q9ULD8 1083 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 hCG_1642624A0A1W2PR95 340 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 CALML3P27482 149 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 RXRBP28702 533 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 ATP2C1P98194 919 aaPredicted RBP11.25□□□□□ -0.61
USP39-214ENST00000474572 NCAPHQ15003 741 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 LONRF3Q496Y0 759 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 NT5DC1Q5TFE4 455 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 GALNT17Q6IS24 598 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 HHIPL2Q6UWX4 724 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 DPP8Q6V1X1 898 aaPredicted RBP11.25□□□□□ -0.61
USP39-214ENST00000474572 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.25□□□□□ -0.61
USP39-214ENST00000474572 STAG2Q8N3U4 1231 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 AOPEPQ8N6M6 819 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 ERCC4Q92889 916 aaPredicted RBP11.25□□□□□ -0.61
USP39-214ENST00000474572 FERMT2Q96AC1 680 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 KCNF1Q9H3M0 494 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 FAM13BQ9NYF5 915 aa11.25□□□□□ -0.61
USP39-214ENST00000474572 SAP30BPQ9UHR5 308 aaKnown RBP11.25□□□□□ -0.61
USP39-214ENST00000474572 KIF13BQ9NQT8 1826 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 ARFGEF1Q9Y6D6 1849 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 A0A087WWV3 80 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 WNT7AO00755 349 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 CYTH3O43739 400 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 SARSP49591 514 aaKnown RBP11.24□□□□□ -0.61
USP39-214ENST00000474572 TERF1P54274 439 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 KIAA2012Q0VF49 1180 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 TTC38Q5R3I4 469 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 PODNQ7Z5L7 613 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 CNNM3Q8NE01 707 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 SPATA20Q8TB22 786 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 TRIM5Q9C035 493 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 TTC12Q9H892 705 aaPredicted RBP11.24□□□□□ -0.61
USP39-214ENST00000474572 SPTLC3Q9NUV7 552 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 TAOK2Q9UL54 1235 aa11.24□□□□□ -0.61
USP39-214ENST00000474572 MYH4Q9Y623 1939 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 SMTNL1A8MU46 457 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 BECN2A8MW95 431 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 RIMBP2O15034 1052 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 ACTN4O43707 911 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 SNHG28P0DPA3 235 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 TOP1P11387 765 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 VEGFAP15692 232 aaPredicted RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 NLRP5P59047 1200 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 HDLBPQ00341 1268 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 PLCB2Q00722 1185 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 SLC4A8Q2Y0W8 1093 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 NOM1Q5C9Z4 860 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 TYW1BQ6NUM6 668 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 KANK3Q6NY19 840 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 OLFM4Q6UX06 510 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 SH3RF1Q7Z6J0 888 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 FOXP4Q8IVH2 680 aaPredicted RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 BLIDQ8IZY5 108 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 TRIML1Q8N9V2 468 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 CCDC148Q8NFR7 591 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 OSBPL5Q9H0X9 879 aaPredicted RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 CSRNP2Q9H175 543 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 DDX4Q9NQI0 724 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 BARHL2Q9NY43 387 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 SWAP70Q9UH65 585 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 PCDHA4Q9UN74 947 aa11.23□□□□□ -0.61
USP39-214ENST00000474572 TTF2Q9UNY4 1162 aaKnown RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 COL2A1P02458 1487 aaPredicted RBP11.23□□□□□ -0.61
USP39-214ENST00000474572 hCG_1984214I3L0E3 225 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 STXBP3O00186 592 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 MYO1BO43795 1136 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 NPM3O75607 178 aaKnown RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 PNOCQ13519 176 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 POSTNQ15063 836 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 SLC15A2Q16348 729 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 WWC2Q6AWC2 1192 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 APOBEC3HQ6NTF7 200 aaKnown RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 C2CD5Q86YS7 1000 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 ZNF713Q8N859 430 aaPredicted RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 KIAA1524Q8TCG1 905 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 C7orf43Q8WVR3 580 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 CEP95Q96GE4 821 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 ZDHHC15Q96MV8 337 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 ZNF830Q96NB3 372 aaPredicted RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 CAMKK2Q96RR4 588 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 EHD4Q9H223 541 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 ANO8Q9HCE9 1232 aaPredicted RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 SERTAD1Q9UHV2 236 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 HOOK1Q9UJC3 728 aaKnown RBP11.22□□□□□ -0.61
USP39-214ENST00000474572 PCDHA5Q9Y5H7 936 aa11.22□□□□□ -0.61
USP39-214ENST00000474572 ESYT2A0FGR8 921 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms