RNA–Protein interactions for RNA: ENST00000471494.5

RNF220-208, Transcript of ring finger protein 220, human

TSL 5

Gene RNF220, Length 720 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF220-208	ENST00000471494	STAP2	Q9UGK3	403 aa		28	■■■□□ 2.07
RNF220-208	ENST00000471494	TMX2	Q9Y320	296 aa		28	■■■□□ 2.07
RNF220-208	ENST00000471494		A0A0G2JMZ2	1700 aa		28	■■■□□ 2.07
RNF220-208	ENST00000471494	SPDYE16	A6NNV3	312 aa	Predicted RBP	27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	HMGCR	P04035	888 aa		27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	ATP2B2	Q01814	1243 aa		27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	SEC62	Q99442	399 aa	Known RBP	27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	NACAP1	Q9BZK3	213 aa		27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	KANSL2	Q9H9L4	492 aa		27.99	■■■□□ 2.07
RNF220-208	ENST00000471494	CNMD	O75829	334 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	CYP2B6	P20813	491 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	PDE1A	P54750	535 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	ZMYM1	Q5SVZ6	1142 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	GPR142	Q7Z601	462 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	PLEKHH3	Q7Z736	793 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	SIAH1	Q8IUQ4	282 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	STK11IP	Q8N1F8	1099 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	VCPKMT	Q9H867	229 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	MKNK2	Q9HBH9	465 aa		27.98	■■■□□ 2.07
RNF220-208	ENST00000471494	MYH4	Q9Y623	1939 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	PATL2	C9JE40	543 aa	Known RBP	27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	COG2	Q14746	738 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	KIAA1755	Q5JYT7	1200 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	SPICE1	Q8N0Z3	855 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	EXOC6	Q8TAG9	804 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	U2AF1L4	Q8WU68	220 aa	Known RBP	27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	LNPK	Q9C0E8	428 aa		27.97	■■■□□ 2.07
RNF220-208	ENST00000471494	EEF2	P13639	858 aa	Known RBP	27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	WDR78	Q5VTH9	848 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	SMC5	Q8IY18	1101 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	IFNL3	Q8IZI9	196 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	EVI5L	Q96CN4	794 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	ZNF287	Q9HBT7	754 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	HOXC10	Q9NYD6	342 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	BTBD7	Q9P203	1132 aa		27.96	■■■□□ 2.07
RNF220-208	ENST00000471494	XRCC5	P13010	732 aa	Known RBP	27.95	■■■□□ 2.06
RNF220-208	ENST00000471494	RASA1	P20936	1047 aa		27.95	■■■□□ 2.06
RNF220-208	ENST00000471494	WDR46	O15213	610 aa	Known RBP	27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	SGPL1	O95470	568 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	RGS2	P41220	211 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	B4GALNT3	Q6L9W6	998 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	TRIB2	Q92519	343 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	DEFB118	Q96PH6	123 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	27.94	■■■□□ 2.06	5e-6	■■□□□ 13.9
RNF220-208	ENST00000471494	NAPB	Q9H115	298 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	GOPC	Q9HD26	462 aa		27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	PAK6	Q9NQU5	681 aa	Predicted RBP	27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	COL11A1	P12107	1806 aa	Predicted RBP	27.94	■■■□□ 2.06
RNF220-208	ENST00000471494	FLOT1	O75955	427 aa		27.93	■■■□□ 2.06
RNF220-208	ENST00000471494	TRMT44	Q8IYL2	757 aa	Known RBP	27.93	■■■□□ 2.06
RNF220-208	ENST00000471494	IVNS1ABP	Q9Y6Y0	642 aa		27.93	■■■□□ 2.06
RNF220-208	ENST00000471494	CEP290	O15078	2479 aa		27.93	■■■□□ 2.06
RNF220-208	ENST00000471494	ZKSCAN1	P17029	563 aa	Predicted RBP	27.92	■■■□□ 2.06
RNF220-208	ENST00000471494	MORN1	Q5T089	497 aa		27.92	■■■□□ 2.06
RNF220-208	ENST00000471494	USP6NL	Q92738	828 aa		27.92	■■■□□ 2.06
RNF220-208	ENST00000471494	APBA2	Q99767	749 aa		27.92	■■■□□ 2.06
RNF220-208	ENST00000471494	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	27.92	■■■□□ 2.06
RNF220-208	ENST00000471494	RAD21	O60216	631 aa		27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	SLC3A2	P08195	630 aa	Known RBP	27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	CAPN2	P17655	700 aa		27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	TRIM32	Q13049	653 aa		27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	MB21D1	Q8N884	522 aa		27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	HMX1	Q9NP08	348 aa	Predicted RBP	27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	SUPT16H	Q9Y5B9	1047 aa	Known RBP	27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	RPTOR	Q8N122	1335 aa		27.91	■■■□□ 2.06
RNF220-208	ENST00000471494	PRDM1	O75626	825 aa		27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	FARP2	O94887	1054 aa	Predicted RBP	27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	TFRC	P02786	760 aa	Known RBP	27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	DSG3	P32926	999 aa		27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	MAP2K5	Q13163	448 aa		27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	SAMD1	Q6SPF0	538 aa	Predicted RBP	27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	CCDC129	Q6ZRS4	1044 aa		27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	ZNF236	Q9UL36	1845 aa		27.9	■■■□□ 2.06
RNF220-208	ENST00000471494	SLC15A5	A6NIM6	579 aa		27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	IGHD	P01880	384 aa		27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	CHD1L	Q86WJ1	897 aa		27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	ATG4C	Q96DT6	458 aa		27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	MOV10L1	Q9BXT6	1211 aa	Known RBP	27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	SPATC1L	Q9H0A9	340 aa		27.89	■■■□□ 2.06
RNF220-208	ENST00000471494	PRKAR2A	P13861	404 aa	Known RBP	27.88	■■■□□ 2.05
RNF220-208	ENST00000471494	PTPRE	P23469	700 aa		27.88	■■■□□ 2.05
RNF220-208	ENST00000471494	PDE4B	Q07343	736 aa		27.88	■■■□□ 2.05
RNF220-208	ENST00000471494	PPARA	Q07869	468 aa		27.88	■■■□□ 2.05
RNF220-208	ENST00000471494	NYAP2	Q9P242	653 aa		27.88	■■■□□ 2.05
RNF220-208	ENST00000471494	TRIM6-TRIM34	B2RNG4	842 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	PLS1	Q14651	629 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	CCL14	Q16627	93 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	UBE2Q1	Q7Z7E8	422 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	CRISPLD2	Q9H0B8	497 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	HELLS	Q9NRZ9	838 aa		27.87	■■■□□ 2.05
RNF220-208	ENST00000471494	NUCB1	Q02818	461 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	GRB14	Q14449	540 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	FAM83B	Q5T0W9	1011 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	MAP3K21	Q5TCX8	1036 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	TICAM2	Q86XR7	235 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	SHCBP1	Q8NEM2	672 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	HTATIP2	Q9BUP3	242 aa		27.86	■■■□□ 2.05
RNF220-208	ENST00000471494	FBXO28	Q9NVF7	368 aa		27.85	■■■□□ 2.05
RNF220-208	ENST00000471494	PLIN4	Q96Q06	1357 aa		27.85	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms