RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 APBA2Q99767 749 aa29.51■■■□□ 2.31
PTCH1-210ENST00000468211 PRO3102Q9H379 93 aa29.51■■■□□ 2.31
PTCH1-210ENST00000468211 OGDHLQ9ULD0 1010 aa29.51■■■□□ 2.31
PTCH1-210ENST00000468211 CCND3P30281 292 aaPredicted RBP29.5■■■□□ 2.31
PTCH1-210ENST00000468211 CCNA1P78396 465 aa29.5■■■□□ 2.31
PTCH1-210ENST00000468211 WDR78Q5VTH9 848 aa29.5■■■□□ 2.31
PTCH1-210ENST00000468211 TRMT44Q8IYL2 757 aaKnown RBP29.5■■■□□ 2.31
PTCH1-210ENST00000468211 DCTPP1Q9H773 170 aa29.5■■■□□ 2.31
PTCH1-210ENST00000468211 CWC22Q9HCG8 908 aaKnown RBP29.5■■■□□ 2.31
PTCH1-210ENST00000468211 FLRT1Q9NZU1 646 aa29.5■■■□□ 2.31
PTCH1-210ENST00000468211 CDK8P49336 464 aa29.49■■■□□ 2.31
PTCH1-210ENST00000468211 TSHZ3Q63HK5 1081 aa29.49■■■□□ 2.31
PTCH1-210ENST00000468211 ECHDC1Q9NTX5 307 aa29.49■■■□□ 2.31
PTCH1-210ENST00000468211 SLC4A4Q9Y6R1 1079 aa29.49■■■□□ 2.31
PTCH1-210ENST00000468211 SZT2Q5T011 3432 aa29.48■■■□□ 2.31
PTCH1-210ENST00000468211 PTPREP23469 700 aa29.48■■■□□ 2.31
PTCH1-210ENST00000468211 COG2Q14746 738 aa29.48■■■□□ 2.31
PTCH1-210ENST00000468211 TANGO6Q9C0B7 1094 aa29.48■■■□□ 2.31
PTCH1-210ENST00000468211 SLC15A5A6NIM6 579 aa29.47■■■□□ 2.31
PTCH1-210ENST00000468211 CTR9Q6PD62 1173 aa29.47■■■□□ 2.31
PTCH1-210ENST00000468211 C16orf86Q6ZW13 317 aa29.47■■■□□ 2.31
PTCH1-210ENST00000468211 NBPF3Q9H094 633 aa29.47■■■□□ 2.31
PTCH1-210ENST00000468211 TMX2Q9Y320 296 aa29.47■■■□□ 2.31
PTCH1-210ENST00000468211 COL11A1P12107 1806 aaPredicted RBP29.46■■■□□ 2.31
PTCH1-210ENST00000468211 ICA1Q05084 483 aa29.46■■■□□ 2.31
PTCH1-210ENST00000468211 SPICE1Q8N0Z3 855 aa29.46■■■□□ 2.31
PTCH1-210ENST00000468211 GLRX3O76003 335 aaKnown RBP29.45■■■□□ 2.31
PTCH1-210ENST00000468211 GRB14Q14449 540 aa29.45■■■□□ 2.31
PTCH1-210ENST00000468211 LHX8Q68G74 356 aa29.45■■■□□ 2.31
PTCH1-210ENST00000468211 ZSCAN25Q6NSZ9 544 aa29.45■■■□□ 2.31
PTCH1-210ENST00000468211 NPLOC4Q8TAT6 608 aa29.45■■■□□ 2.31
PTCH1-210ENST00000468211 MOV10L1Q9BXT6 1211 aaKnown RBP29.45■■■□□ 2.31
PTCH1-210ENST00000468211 HOXC10Q9NYD6 342 aa29.45■■■□□ 2.31
PTCH1-210ENST00000468211 GREB1LQ9C091 1923 aaPredicted RBP29.45■■■□□ 2.3
PTCH1-210ENST00000468211 CCDC17Q96LX7 622 aa29.44■■■□□ 2.3
PTCH1-210ENST00000468211 STRBPQ96SI9 672 aaKnown RBP29.44■■■□□ 2.3
PTCH1-210ENST00000468211 C11orf49Q9H6J7 331 aa29.44■■■□□ 2.3
PTCH1-210ENST00000468211 ARHGEF10LQ9HCE6 1279 aa29.44■■■□□ 2.3
PTCH1-210ENST00000468211 ZNFX1Q9P2E3 1918 aaKnown RBP29.43■■■□□ 2.3
PTCH1-210ENST00000468211 ZNF236Q9UL36 1845 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 C7orf61Q8IZ16 206 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 KBTBD3Q8NAB2 608 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 VCPKMTQ9H867 229 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 PCDHB15Q9Y5E8 787 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 PFASO15067 1338 aa29.43■■■□□ 2.3
PTCH1-210ENST00000468211 HOXC6P09630 235 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 DSG3P32926 999 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 AMOTL1Q8IY63 956 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 LPAR1Q92633 364 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 OSBP2Q969R2 916 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 DDRGK1Q96HY6 314 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 SPATC1LQ9H0A9 340 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 IVNS1ABPQ9Y6Y0 642 aa29.42■■■□□ 2.3
PTCH1-210ENST00000468211 EEF2P13639 858 aaKnown RBP29.41■■■□□ 2.3
PTCH1-210ENST00000468211 ATG4CQ96DT6 458 aa29.41■■■□□ 2.3
PTCH1-210ENST00000468211 STAP2Q9UGK3 403 aa29.41■■■□□ 2.3
PTCH1-210ENST00000468211 GSG1L2A8MUP6 293 aa29.4■■■□□ 2.3
PTCH1-210ENST00000468211 FLOT1O75955 427 aa29.4■■■□□ 2.3
PTCH1-210ENST00000468211 IGHA2P01877 340 aa29.4■■■□□ 2.3
PTCH1-210ENST00000468211 ERCC3P19447 782 aa29.4■■■□□ 2.3
PTCH1-210ENST00000468211 MFSD14CQ5VZR4 134 aa29.4■■■□□ 2.3
PTCH1-210ENST00000468211 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.4■■■□□ 2.3
PTCH1-210ENST00000468211 COL6A1P12109 1028 aa29.39■■■□□ 2.3
PTCH1-210ENST00000468211 CYP2C19P33261 490 aa29.39■■■□□ 2.3
PTCH1-210ENST00000468211 ATP2B2Q01814 1243 aa29.39■■■□□ 2.3
PTCH1-210ENST00000468211 SH2D4AQ9H788 454 aa29.39■■■□□ 2.3
PTCH1-210ENST00000468211 ZMYND8Q9ULU4 1186 aaPredicted RBP29.39■■■□□ 2.3
PTCH1-210ENST00000468211 RNF113AO15541 343 aaKnown RBP29.38■■■□□ 2.29
PTCH1-210ENST00000468211 ADORA2AP29274 412 aa29.38■■■□□ 2.29
PTCH1-210ENST00000468211 SAMD1Q6SPF0 538 aaPredicted RBP29.38■■■□□ 2.29
PTCH1-210ENST00000468211 STK11IPQ8N1F8 1099 aa29.38■■■□□ 2.29
PTCH1-210ENST00000468211 TRPV1Q8NER1 839 aa29.38■■■□□ 2.29
PTCH1-210ENST00000468211 APPBP2Q92624 585 aa29.38■■■□□ 2.29
PTCH1-210ENST00000468211 ARPP21Q9UBL0 812 aaPredicted RBP29.38■■■□□ 2.29
PTCH1-210ENST00000468211 WDR46O15213 610 aaKnown RBP29.37■■■□□ 2.29
PTCH1-210ENST00000468211 PLS1Q14651 629 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 SBK1Q52WX2 424 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 SHCBP1Q8NEM2 672 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 OTUD7AQ8TE49 926 aaPredicted RBP29.37■■■□□ 2.29
PTCH1-210ENST00000468211 GPATCH3Q96I76 525 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 KANSL2Q9H9L4 492 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 EPB41L4AQ9HCS5 686 aaPredicted RBP29.37■■■□□ 2.29
PTCH1-210ENST00000468211 FBXO28Q9NVF7 368 aa29.37■■■□□ 2.29
PTCH1-210ENST00000468211 M0R2C6 588 aa29.36■■■□□ 2.29
PTCH1-210ENST00000468211 COBLO75128 1261 aa29.36■■■□□ 2.29
PTCH1-210ENST00000468211 MB21D1Q8N884 522 aa29.36■■■□□ 2.29
PTCH1-210ENST00000468211 DNAH12Q6ZR08 3092 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 SYN1P17600 705 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 RASA1P20936 1047 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 TMEM132BQ14DG7 1078 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 DPP9Q86TI2 863 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 MYH4Q9Y623 1939 aa29.35■■■□□ 2.29
PTCH1-210ENST00000468211 MINDY4BA8MYZ0 360 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 GPAA1O43292 621 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 STRNO43815 780 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 NCAPG2Q86XI2 1143 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 GDF15Q99988 308 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 DDX20Q9UHI6 824 aaKnown RBP29.34■■■□□ 2.29
PTCH1-210ENST00000468211 ADAMTS5Q9UNA0 930 aa29.34■■■□□ 2.29
PTCH1-210ENST00000468211 LAMA3Q16787 3333 aa29.33■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms