RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TSPY8P0CW00 308 aa7□□□□□ -1.29
USP39-213ENST00000467885 INPP5BP32019 993 aa7□□□□□ -1.29
USP39-213ENST00000467885 SLC4A3P48751 1232 aa7□□□□□ -1.29
USP39-213ENST00000467885 MAP3K9P80192 1104 aa7□□□□□ -1.29
USP39-213ENST00000467885 APOBRQ0VD83 1088 aa7□□□□□ -1.29
USP39-213ENST00000467885 SEPT2Q15019 361 aa7□□□□□ -1.29
USP39-213ENST00000467885 ME3Q16798 604 aa7□□□□□ -1.29
USP39-213ENST00000467885 ABCB5Q2M3G0 1257 aa7□□□□□ -1.29
USP39-213ENST00000467885 CCDC178Q5BJE1 867 aa7□□□□□ -1.29
USP39-213ENST00000467885 LDLRAD1Q5T700 205 aa7□□□□□ -1.29
USP39-213ENST00000467885 PPP1R3FQ6ZSY5 799 aaPredicted RBP7□□□□□ -1.29
USP39-213ENST00000467885 RALYLQ86SE5 291 aaKnown RBP7□□□□□ -1.29
USP39-213ENST00000467885 LDHDQ86WU2 507 aa7□□□□□ -1.29
USP39-213ENST00000467885 BRF1Q92994 677 aa7□□□□□ -1.29
USP39-213ENST00000467885 ZKSCAN4Q969J2 545 aaPredicted RBP7□□□□□ -1.29
USP39-213ENST00000467885 CDCA5Q96FF9 252 aa7□□□□□ -1.29
USP39-213ENST00000467885 TMX3Q96JJ7 454 aa7□□□□□ -1.29
USP39-213ENST00000467885 ZSCAN31Q96LW9 406 aaPredicted RBP7□□□□□ -1.29
USP39-213ENST00000467885 TMEM47Q9BQJ4 181 aa7□□□□□ -1.29
USP39-213ENST00000467885 KANSL2Q9H9L4 492 aa7□□□□□ -1.29
USP39-213ENST00000467885 FAM217BQ9NTX9 383 aaPredicted RBP7□□□□□ -1.29
USP39-213ENST00000467885 NYAP2Q9P242 653 aa7□□□□□ -1.29
USP39-213ENST00000467885 CLIP2Q9UDT6 1046 aa7□□□□□ -1.29
USP39-213ENST00000467885 HPS5Q9UPZ3 1129 aa7□□□□□ -1.29
USP39-213ENST00000467885 PSME4Q14997 1843 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 A0A1W2PRG0 241 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 UBE2Q2LH0YL09 131 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 TK2O00142 265 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 HRO43593 1189 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 GH2P01242 217 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 EEF2P13639 858 aaKnown RBP6.99□□□□□ -1.29
USP39-213ENST00000467885 MCM2P49736 904 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 ST3GAL1Q11201 340 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 TROAPQ12815 778 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 CUL4AQ13619 759 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 ANKRD1Q15327 319 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 MAP3K11Q16584 847 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 TMEM67Q5HYA8 995 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 DMRTA1Q5VZB9 504 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 MOB2Q70IA6 237 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 IQCA1Q86XH1 822 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 NECAB1Q8N987 351 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP39-213ENST00000467885 ACER1Q8TDN7 264 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 HOOK2Q96ED9 719 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 CEP95Q96GE4 821 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 ZNF341Q9BYN7 854 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 GINM1Q9NU53 330 aa6.99□□□□□ -1.29
USP39-213ENST00000467885 ANGEL1Q9UNK9 670 aaKnown RBP6.99□□□□□ -1.29
USP39-213ENST00000467885 PPP1R12BO60237 982 aaPredicted RBP6.98□□□□□ -1.29
USP39-213ENST00000467885 PFKFB2O60825 505 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 DTNBO60941 627 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 GDF11O95390 407 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 LARGE1O95461 756 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 CTDNEP1O95476 244 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 TOP1P11387 765 aaKnown RBP6.98□□□□□ -1.29
USP39-213ENST00000467885 CDC27P30260 824 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 ADD1P35611 737 aaKnown RBP6.98□□□□□ -1.29
USP39-213ENST00000467885 PSEN2P49810 448 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 PRKG1Q13976 671 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 WTAPQ15007 396 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 NTRK3Q16288 839 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 KIAA1755Q5JYT7 1200 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 DCAF15Q66K64 600 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 TMEM179Q6ZVK1 233 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 FANCBQ8NB91 859 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 PTCD2Q8WV60 388 aaKnown RBP6.98□□□□□ -1.29
USP39-213ENST00000467885 UBAC1Q9BSL1 405 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 WDR18Q9BV38 432 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 GPBP1L1Q9HC44 474 aaPredicted RBP6.98□□□□□ -1.29
USP39-213ENST00000467885 CABP5Q9NP86 173 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 TMX2Q9Y320 296 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 TNKSO95271 1327 aa6.98□□□□□ -1.29
USP39-213ENST00000467885 KLF18A0A0U1RQI7 1052 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 ERICH2A1L162 156 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 PALM3A6NDB9 673 aaPredicted RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 UNCXA6NJT0 531 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 USP17L5A8MUK1 530 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 F5H6K3 240 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 K7ELQ4 463 aaPredicted RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 MPHOSPH10O00566 681 aaKnown RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 TTLL1O95922 423 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 ASNSP08243 561 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 SNHG28P0DPA3 235 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 PTPRAP18433 802 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 ECE1P42892 770 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 KLRC3Q07444 240 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 FUT2Q10981 343 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 SCRN1Q12765 414 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 SART3Q15020 963 aaKnown RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 SLC35G1Q2M3R5 365 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 NOL9Q5SY16 702 aaKnown RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 IFIT1BQ5T764 474 aaKnown RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 APOA5Q6Q788 366 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 CCDC84Q86UT8 332 aaPredicted RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 CLEC10AQ8IUN9 316 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 SCYL3Q8IZE3 742 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 WDR90Q96KV7 1748 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 IPO9Q96P70 1041 aaKnown RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 MAP3K14Q99558 947 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms