RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 TRIM35Q9UPQ4 493 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 ARHGEF40Q8TER5 1519 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 CD19P15391 556 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 KRT25Q7Z3Z0 450 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 FAM76AQ8TAV0 307 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 LZTS2Q9BRK4 669 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 PAGR1Q9BTK6 254 aa9.66□□□□□ -0.86
HPS4-209ENST00000466781 RNF17Q9BXT8 1623 aaKnown RBP9.66□□□□□ -0.86
HPS4-209ENST00000466781 SPDYE16A6NNV3 312 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 BCRP11274 1271 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 TNFAIP1Q13829 316 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 NOLC1Q14978 699 aaKnown RBP eCLIP9.65□□□□□ -0.86
HPS4-209ENST00000466781 CALCRLQ16602 461 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SPDYE2Q495Y8 402 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SEPT14Q6ZU15 432 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 FNBP4Q8N3X1 1017 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 SNX29Q8TEQ0 813 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 ATP11AP98196 1134 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 TBC1D8BQ0IIM8 1120 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 LGSNQ5TDP6 509 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 ARHGEF16Q5VV41 709 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SND1Q7KZF4 910 aaKnown RBP eCLIP9.65□□□□□ -0.86
HPS4-209ENST00000466781 SDCCAG8Q86SQ7 713 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 METTL13Q8N6R0 699 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 NBPF3Q9H094 633 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 KCNG1Q9UIX4 513 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 ASAP1Q9ULH1 1129 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 KDRP35968 1356 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SYNRGQ9UMZ2 1314 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 GLI2P10070 1586 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 DIP2CQ9Y2E4 1556 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SERPINB2P05120 415 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 RPS8P62241 208 aaKnown RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 NEDD9Q14511 834 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 DALRD3Q5D0E6 543 aaKnown RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 GADL1Q6ZQY3 521 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 MRPL44Q9H9J2 332 aaKnown RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 MLXIPQ9HAP2 919 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 TRPC6Q9Y210 931 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 SPATA31A6Q5VVP1 1343 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 CASQ2O14958 399 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 ABL1P00519 1130 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 CFBP00751 764 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 ATF7P17544 494 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 CAPN2P17655 700 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 KCNQ4P56696 695 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 PABPC4Q13310 644 aaKnown RBP eCLIP9.65□□□□□ -0.86
HPS4-209ENST00000466781 CYP26C1Q6V0L0 522 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 RNF169Q8NCN4 708 aa9.65□□□□□ -0.86
HPS4-209ENST00000466781 BAG1Q99933 345 aaPredicted RBP9.65□□□□□ -0.86
HPS4-209ENST00000466781 ZC3H13Q5T200 1668 aaKnown RBP9.65□□□□□ -0.87
HPS4-209ENST00000466781 I3L4J1 428 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 YARSP54577 528 aaKnown RBP9.65□□□□□ -0.87
HPS4-209ENST00000466781 GTF2IP78347 998 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 MYL5Q02045 173 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 NONOQ15233 471 aaKnown RBP eCLIP9.65□□□□□ -0.87
HPS4-209ENST00000466781 DOK7Q18PE1 504 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 GNPTABQ3T906 1256 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 DEPTORQ8TB45 409 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 GLG1Q92896 1179 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 NUF2Q9BZD4 464 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 CTTNBP2NLQ9P2B4 639 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 SPATA31E1Q6ZUB1 1445 aa9.65□□□□□ -0.87
HPS4-209ENST00000466781 WDR46O15213 610 aaKnown RBP9.64□□□□□ -0.87
HPS4-209ENST00000466781 EXOC3O60645 756 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 MAN1A1P33908 653 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 CTDSPL2Q05D32 466 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 MUM1L1Q5H9M0 696 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 SPATA5Q8NB90 893 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 OTUD7AQ8TE49 926 aaPredicted RBP9.64□□□□□ -0.87
HPS4-209ENST00000466781 EBAG9O00559 213 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 TTC38Q5R3I4 469 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 CEP120Q8N960 986 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 CPA1P15085 419 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 UTP14CQ5TAP6 766 aaKnown RBP9.64□□□□□ -0.87
HPS4-209ENST00000466781 ZBTB38Q8NAP3 1195 aaPredicted RBP9.64□□□□□ -0.87
HPS4-209ENST00000466781 UIMC1Q96RL1 719 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 NUP58Q9BVL2 599 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 VPS16Q9H269 839 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 VCX3BQ9H321 246 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 PTPRMP28827 1452 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 XRCC6P12956 609 aaKnown RBP eCLIP9.64□□□□□ -0.876e-6■■■■■ 31.4
HPS4-209ENST00000466781 PAK1Q13153 545 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 KRT81Q14533 505 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 CEP57Q86XR8 500 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 CSGALNACT2Q8N6G5 542 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 ZNF526Q8TF50 670 aaPredicted RBP9.64□□□□□ -0.87
HPS4-209ENST00000466781 ASIC3Q9UHC3 531 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.64□□□□□ -0.87
HPS4-209ENST00000466781 NEURL1BA8MQ27 555 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 ARHGEF6Q15052 776 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 C8orf74Q6P047 294 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 SULF1Q8IWU6 871 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 TEKT1Q969V4 418 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 USP40Q9NVE5 1235 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 TBC1D7Q9P0N9 293 aa9.64□□□□□ -0.87
HPS4-209ENST00000466781 KIF24Q5T7B8 1368 aa9.63□□□□□ -0.87
HPS4-209ENST00000466781 TNNI1P19237 187 aa9.63□□□□□ -0.87
HPS4-209ENST00000466781 PSMD6Q15008 389 aa9.63□□□□□ -0.87
HPS4-209ENST00000466781 CCDC62Q6P9F0 684 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms