RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BACE1P56817 501 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 PPP4CP60510 307 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 RRP1BQ14684 758 aaKnown RBP14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 SNX17Q15036 470 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 AKNAD1Q5T1N1 836 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 B4GALNT3Q6L9W6 998 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 GTF3C2Q8WUA4 911 aaPredicted RBP14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 ECHDC1Q9NTX5 307 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 SALL3Q9BXA9 1300 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 CDK5RAP2Q96SN8 1893 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 C19orf81C9J6K1 198 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 KBTBD13C9JR72 458 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 GLRX3O76003 335 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 ATP2B2Q01814 1243 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 NUCB1Q02818 461 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 MTMR2Q13614 643 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 TRIM60Q495X7 471 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 C1orf53Q5VUE5 145 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 IL27Q8NEV9 243 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 PAGR1Q9BTK6 254 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 CWC22Q9HCG8 908 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 NDUFB9Q9Y6M9 179 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 TTC41PQ6P2S7 1318 aa14.38□□□□□ -0.11
SQSTM1-206ENST00000466342 SMCHD1A6NHR9 2005 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 FOCADQ5VW36 1801 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 MX1P20591 662 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 EPHB4P54760 987 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 TMED8Q6PL24 325 aaPredicted RBP14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 POTEEQ6S8J3 1075 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 CHD1LQ86WJ1 897 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 TEX11Q8IYF3 940 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 OTUD7AQ8TE49 926 aaPredicted RBP14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 LNPKQ9C0E8 428 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 DHX36Q9H2U1 1008 aaKnown RBP14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 BOLA2Q9H3K6 86 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 TACC3Q9Y6A5 838 aa14.37□□□□□ -0.11
SQSTM1-206ENST00000466342 SLC15A5A6NIM6 579 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 HOXC6P09630 235 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 PTPREP23469 700 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 ITGB8P26012 769 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 TTF1Q15361 905 aaPredicted RBP14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 CERS3Q8IU89 383 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 TRPV1Q8NER1 839 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 SH3RF3Q8TEJ3 882 aaPredicted RBP14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 DNAJC2Q99543 621 aaKnown RBP14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 HAUS7Q99871 368 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 ANTXR1Q9H6X2 564 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 PIH1D3Q9NQM4 214 aaKnown RBP14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 AATFQ9NY61 560 aaKnown RBP eCLIP14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 HCN4Q9Y3Q4 1203 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 REV3LO60673 3130 aa14.36□□□□□ -0.11
SQSTM1-206ENST00000466342 USP17L10C9JJH3 530 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 ERC2O15083 957 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 ASNSP08243 561 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 CYP2C19P33261 490 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 CCNA1P78396 465 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 TLE2Q04725 743 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 TSHZ3Q63HK5 1081 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 NPLOC4Q8TAT6 608 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 PI4K2BQ8TCG2 481 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 TIFAQ96CG3 184 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 LRFN3Q9BTN0 628 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 PI4KBQ9UBF8 816 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 HERC5Q9UII4 1024 aaKnown RBP14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 RABGAP1Q9Y3P9 1069 aa14.35□□□□□ -0.11
SQSTM1-206ENST00000466342 GOLIM4O00461 696 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 IDH1O75874 414 aaKnown RBP14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 IGHA2P01877 340 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 CYBAP13498 195 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 CYP7A1P22680 504 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 ADCYAP1R1P41586 468 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 CCDC85BQ15834 202 aaPredicted RBP14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 ERICH6BQ5W0A0 696 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 ADGRA1Q86SQ6 560 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 FOXP4Q8IVH2 680 aaPredicted RBP14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 TGFBRAP1Q8WUH2 860 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 PAG1Q9NWQ8 432 aa14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 ZNFX1Q9P2E3 1918 aaKnown RBP14.34□□□□□ -0.11
SQSTM1-206ENST00000466342 KIAA0355O15063 1070 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 CLTBP09497 229 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 RAG1P15918 1043 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 PDE1AP54750 535 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 FPGSQ05932 587 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 WDR78Q5VTH9 848 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 CENPQQ7L2Z9 268 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 FERMT2Q96AC1 680 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 PRDM12Q9H4Q4 367 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 IVNS1ABPQ9Y6Y0 642 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 SIPA1L1O43166 1804 aa14.33□□□□□ -0.12
SQSTM1-206ENST00000466342 CHD9Q3L8U1 2897 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 GBF1Q92538 1859 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 SEPT4O43236 478 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 CNMDO75829 334 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 BMP1P13497 986 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 GRB14Q14449 540 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 ANO1Q5XXA6 986 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 METTL16Q86W50 562 aaKnown RBP14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 CCDC136Q96JN2 1154 aa14.32□□□□□ -0.12
SQSTM1-206ENST00000466342 DYNLL1P63167 89 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms