RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 OLFML2BQ68BL8 750 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 ZNF804AQ7Z570 1209 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 SPRED2Q7Z698 418 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 ZNF605Q86T29 641 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 DPP9Q86TI2 863 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 FAM126BQ8IXS8 530 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 SUMF1Q8NBK3 374 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 FLCNQ8NFG4 579 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 JARID2Q92833 1246 aaPredicted RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 BORCS6Q96GS4 357 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 RPGRIP1Q96KN7 1286 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 RTP3Q9BQQ7 232 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 PAGR1Q9BTK6 254 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 PHF7Q9BWX1 381 aaPredicted RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 ANKRD2Q9GZV1 360 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 TXNRD2Q9NNW7 524 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 SLC5A4Q9NY91 659 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 KCNK4Q9NYG8 393 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 DBF4Q9UBU7 674 aaPredicted RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 LRRFIP2Q9Y608 721 aaKnown RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 PRRC2BQ5JSZ5 2229 aaKnown RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 KIF16BQ96L93 1317 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 OTOFQ9HC10 1997 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 MAST4O15021 2626 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 PLXNA1Q9UIW2 1896 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 COL4A1P02462 1669 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 COL4A3Q01955 1670 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 ANKRD11Q6UB99 2663 aaPredicted RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 MAP1BP46821 2468 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 J3QKU1 62 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 HTATSF1O43719 755 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 CTNND1O60716 968 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 EYA4O95677 639 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 AOC1P19801 751 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 PTPREP23469 700 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 KLRK1P26718 216 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 LTBRP36941 435 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CCR10P46092 362 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 NDUFV1P49821 464 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CDK7P50613 346 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 HMGCS2P54868 508 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 HERVK_113P62684 666 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 SRSF1Q07955 248 aaKnown RBP eCLIP3.43□□□□□ -1.86
USP40-211ENST00000464956 AIMP1Q12904 312 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 GRB14Q14449 540 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CTC1Q2NKJ3 1217 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 IL31Q6EBC2 164 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 DEFB128Q7Z7B8 93 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 KREMEN2Q8NCW0 462 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 NPLOC4Q8TAT6 608 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 FAM151AQ8WW52 585 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 TEKT1Q969V4 418 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CCDC85AQ96PX6 553 aaPredicted RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 THUMPD2Q9BTF0 503 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 TBC1D2Q9BYX2 928 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CLMPQ9H6B4 373 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 TMOD4Q9NZQ9 345 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 NRBP1Q9UHY1 535 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 GMEB2Q9UKD1 530 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 SORCS3Q9UPU3 1222 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 RAI2Q9Y5P3 530 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 NDUFB9Q9Y6M9 179 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 TRANK1O15050 2925 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 RIF1Q5UIP0 2472 aaKnown RBP3.43□□□□□ -1.86
USP40-211ENST00000464956 UMODL1Q5DID0 1318 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 CACNA1HO95180 2353 aa3.43□□□□□ -1.86
USP40-211ENST00000464956 GVINP1Q7Z2Y8 2422 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 KMT2EQ8IZD2 1858 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 LINC01553A4QN01 128 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PHF20L1A8MW92 1017 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 SPTLC1O15269 473 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PDE8AO60658 829 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PEX10O60683 326 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 TBX10O75333 385 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 BAIAP3O94812 1187 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 CD4P01730 458 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 AKR1A1P14550 325 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 IL1R1P14778 569 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 IGHMBP2P38935 993 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 HDLBPQ00341 1268 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 DLX2Q07687 328 aaPredicted RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 TCP10Q12799 353 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 SPP2Q13103 211 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 RRP1BQ14684 758 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 TAF7Q15545 349 aaPredicted RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 KCNA10Q16322 511 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 Q3C1V9 767 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PRAMEF19Q5SWL8 479 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PCSK9Q8NBP7 692 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 ZNF280CQ8ND82 737 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 PNISRQ8TF01 805 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 RIN2Q8WYP3 895 aaPredicted RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 SCLYQ96I15 445 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 RAD9AQ99638 391 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 NOC4LQ9BVI4 516 aaKnown RBP3.42□□□□□ -1.86
USP40-211ENST00000464956 ADAM33Q9BZ11 813 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 FTOQ9C0B1 505 aaKnown RBP eCLIP3.42□□□□□ -1.86
USP40-211ENST00000464956 WNT8AQ9H1J5 351 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 SPC25Q9HBM1 224 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms