RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 ERCC3P19447 782 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 SHMT1P34896 483 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 MAP3K12Q12852 859 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 POLA2Q14181 598 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 SEPT2Q15019 361 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 LRRC41Q15345 812 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 PRAMEF19Q5SWL8 479 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 C1orf53Q5VUE5 145 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 TMED8Q6PL24 325 aaPredicted RBP17.61■□□□□ 0.41
SMC1A-204ENST00000463684 SH3RF1Q7Z6J0 888 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 CLUAP1Q96AJ1 413 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 TRIM43Q96BQ3 446 aaPredicted RBP17.61■□□□□ 0.41
SMC1A-204ENST00000463684 MROH8Q9H579 483 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 TACC3Q9Y6A5 838 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 VCANP13611 3396 aa17.61■□□□□ 0.41
SMC1A-204ENST00000463684 COBLO75128 1261 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 PLCD1P51178 756 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 ATP8B2P98198 1209 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 PLS1Q14651 629 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 NCAPG2Q86XI2 1143 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 ABRAQ8N0Z2 381 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 MB21D1Q8N884 522 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 SSH3Q8TE77 659 aa17.6■□□□□ 0.41
SMC1A-204ENST00000463684 CCDC8Q9H0W5 538 aaPredicted RBP17.6■□□□□ 0.41
SMC1A-204ENST00000463684 FRMPD3Q5JV73 1810 aa17.59■□□□□ 0.41
SMC1A-204ENST00000463684 TMEM265A0A087WTH1 108 aa17.59■□□□□ 0.41
SMC1A-204ENST00000463684 GUCY1A2P33402 732 aa17.59■□□□□ 0.41
SMC1A-204ENST00000463684 TLE2Q04725 743 aa17.59■□□□□ 0.41
SMC1A-204ENST00000463684 RNPC3Q96LT9 517 aaKnown RBP17.59■□□□□ 0.41
SMC1A-204ENST00000463684 DBNLQ9UJU6 430 aaKnown RBP17.59■□□□□ 0.41
SMC1A-204ENST00000463684 FOCADQ5VW36 1801 aa17.58■□□□□ 0.41
SMC1A-204ENST00000463684 BCAR3O75815 825 aa17.58■□□□□ 0.4
SMC1A-204ENST00000463684 FCER1AP12319 257 aa17.58■□□□□ 0.4
SMC1A-204ENST00000463684 MAML3Q96JK9 1138 aa17.58■□□□□ 0.4
SMC1A-204ENST00000463684 TLR7Q9NYK1 1049 aaKnown RBP17.58■□□□□ 0.4
SMC1A-204ENST00000463684 TNNQ9UQP3 1299 aa17.58■□□□□ 0.4
SMC1A-204ENST00000463684 MAGEB6P1A0A0J9YX57 407 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 A0A1W2PRG0 241 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 CLTBP09497 229 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 RARBP10826 455 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 RAG1P15918 1043 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 DSG3P32926 999 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 FAM47AQ5JRC9 791 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 RNF180Q86T96 592 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 XPNPEP3Q9NQH7 507 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 NRBP1Q9UHY1 535 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 PHF24Q9UPV7 400 aa17.57■□□□□ 0.4
SMC1A-204ENST00000463684 CDK5RAP2Q96SN8 1893 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 LTBP2Q14767 1821 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 FLOT1O75955 427 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 GABPAQ06546 454 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 EAF2Q96CJ1 260 aaPredicted RBP17.56■□□□□ 0.4
SMC1A-204ENST00000463684 CRNKL1Q9BZJ0 848 aaKnown RBP17.56■□□□□ 0.4
SMC1A-204ENST00000463684 ANTXR1Q9H6X2 564 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 MCM9Q9NXL9 1143 aa17.56■□□□□ 0.4
SMC1A-204ENST00000463684 NOP58Q9Y2X3 529 aaKnown RBP17.56■□□□□ 0.4
SMC1A-204ENST00000463684 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.55■□□□□ 0.4
SMC1A-204ENST00000463684 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.55■□□□□ 0.4
SMC1A-204ENST00000463684 SLC25A27O95847 323 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 ITGB8P26012 769 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 FPGSQ05932 587 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
SMC1A-204ENST00000463684 TMEM179Q6ZVK1 233 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 TMEM57Q8N5G2 664 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 RIOK1Q9BRS2 568 aaKnown RBP17.55■□□□□ 0.4
SMC1A-204ENST00000463684 SH2D4AQ9H788 454 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 TMEM39AQ9NV64 488 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 PRUNE2Q8WUY3 3088 aa17.55■□□□□ 0.4
SMC1A-204ENST00000463684 KIAA0355O15063 1070 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 PQBP1O60828 265 aaKnown RBP17.54■□□□□ 0.4
SMC1A-204ENST00000463684 TJAP1Q5JTD0 557 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 ATG4CQ96DT6 458 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 ARHGEF10LQ9HCE6 1279 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 MYH1P12882 1939 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 RLFQ13129 1914 aa17.54■□□□□ 0.4
SMC1A-204ENST00000463684 SPTBN5Q9NRC6 3674 aaKnown RBP17.54■□□□□ 0.4
SMC1A-204ENST00000463684 PGK1P00558 417 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 EPHB4P54760 987 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 GRIN2CQ14957 1233 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 TTF1Q15361 905 aaPredicted RBP17.53■□□□□ 0.4
SMC1A-204ENST00000463684 KIAA1755Q5JYT7 1200 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 ZKSCAN2Q63HK3 967 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 SPICE1Q8N0Z3 855 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 MMP19Q99542 508 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 SWAP70Q9UH65 585 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 ZNF236Q9UL36 1845 aa17.53■□□□□ 0.4
SMC1A-204ENST00000463684 A0A1W2PQ45 241 aaPredicted RBP17.52■□□□□ 0.4
SMC1A-204ENST00000463684 A0A1W2PQY0 241 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 DCDC2CA8MYV0 355 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 DNAJB2P25686 324 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 KCTD2Q14681 263 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 SLC9C2Q5TAH2 1124 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 TINF2Q9BSI4 451 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 C1orf115Q9H7X2 142 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 VCPKMTQ9H867 229 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 DIS3Q9Y2L1 958 aaKnown RBP17.52■□□□□ 0.4
SMC1A-204ENST00000463684 TMX2Q9Y320 296 aa17.52■□□□□ 0.4
SMC1A-204ENST00000463684 TNFRSF10AO00220 468 aa17.51■□□□□ 0.39
SMC1A-204ENST00000463684 WDR46O15213 610 aaKnown RBP17.51■□□□□ 0.39
SMC1A-204ENST00000463684 PGK2P07205 417 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms