RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 FAM178BQ8IXR5 827 aa6.37□□□□□ -1.39
VPS41-210ENST00000462429 CCDC144CPQ8IYA2 1237 aa6.37□□□□□ -1.39
VPS41-210ENST00000462429 HEXIM2Q96MH2 286 aaKnown RBP6.37□□□□□ -1.39
VPS41-210ENST00000462429 LNPKQ9C0E8 428 aa6.37□□□□□ -1.39
VPS41-210ENST00000462429 OSBPL2Q9H1P3 480 aa6.37□□□□□ -1.39
VPS41-210ENST00000462429 KCNH3Q9ULD8 1083 aa6.37□□□□□ -1.39
VPS41-210ENST00000462429 CBX7O95931 251 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 C6orf15Q6UXA7 325 aaPredicted RBP6.36□□□□□ -1.39
VPS41-210ENST00000462429 DPH6Q7L8W6 267 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 ZDHHC13Q8IUH4 622 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 CELF2-AS1Q8N7Q2 184 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 VWCEQ96DN2 955 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 ZNF512BQ96KM6 892 aaPredicted RBP6.36□□□□□ -1.39
VPS41-210ENST00000462429 SEMA6BQ9H3T3 888 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 MKNK2Q9HBH9 465 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 ST7Q9NRC1 585 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 PCDHB10Q9UN67 800 aa6.36□□□□□ -1.39
VPS41-210ENST00000462429 COL17A1Q9UMD9 1497 aaPredicted RBP6.35□□□□□ -1.39
VPS41-210ENST00000462429 FAM155AB1AL88 458 aaPredicted RBP6.35□□□□□ -1.39
VPS41-210ENST00000462429 CYP26A1O43174 497 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 ZNF865P0CJ78 1059 aaPredicted RBP6.35□□□□□ -1.39
VPS41-210ENST00000462429 NAT2P11245 290 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 SERINC3Q13530 473 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 NFE2L2Q16236 605 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 TDRD10Q5VZ19 366 aaKnown RBP6.35□□□□□ -1.39
VPS41-210ENST00000462429 KIAA1211LQ6NV74 962 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 PPFIBP1Q86W92 1011 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 MFSD4AQ8N468 514 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 MKL1Q969V6 931 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 LRRC4CQ9HCJ2 640 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 PIM2Q9P1W9 311 aa6.35□□□□□ -1.39
VPS41-210ENST00000462429 CNTNAP4Q9C0A0 1308 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 LOC105371045A0A1W2PR82 267 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 C9IYK1 514 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 GJB6O95452 261 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 TP53P04637 393 aaPredicted RBP6.34□□□□□ -1.39
VPS41-210ENST00000462429 OXCT1P55809 520 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 TCEAL1Q15170 157 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 PRSS36Q5K4E3 855 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 PIWIL2Q8TC59 973 aaKnown RBP6.34□□□□□ -1.39
VPS41-210ENST00000462429 MICAL1Q8TDZ2 1067 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 KLHL6Q8WZ60 621 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 ASCC2Q9H1I8 757 aaPredicted RBP6.34□□□□□ -1.39
VPS41-210ENST00000462429 ZSWIM4Q9H7M6 989 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 FAM86C1Q9NVL1 165 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 PCDHB12Q9Y5F1 795 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 CAPN6Q9Y6Q1 641 aa6.34□□□□□ -1.39
VPS41-210ENST00000462429 B2RBV5 119 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 K7ELQ4 463 aaPredicted RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 CEACAM5P06731 702 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 FOSL1P15407 271 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 ITIH2P19823 946 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 GRIK1P39086 918 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 ZNF143P52747 638 aaPredicted RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 AUHQ13825 339 aaKnown RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 NBPF9Q3BBW0 867 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 CCDC144BQ3MJ40 725 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 ANKRD39Q53RE8 183 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 AXDND1Q5T1B0 1012 aaPredicted RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 HEATR6Q6AI08 1181 aaKnown RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 EEPD1Q7L9B9 569 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 LRP10Q7Z4F1 713 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 C7orf61Q8IZ16 206 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 FAM181AQ8N9Y4 354 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 DTWD2Q8NBA8 298 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 Q96M66 194 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 SRPK1Q96SB4 655 aaKnown RBP6.33□□□□□ -1.4
VPS41-210ENST00000462429 HAUS7Q99871 368 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 CCDC113Q9H0I3 377 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 FBXL21Q9UKT6 434 aa6.33□□□□□ -1.4
VPS41-210ENST00000462429 ANKRD34BA5PLL1 514 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 PRR19A6NJB7 356 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 PRR33A8MZF0 331 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 LRRN2O75325 713 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 DCAF15Q66K64 600 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 MRFAP1L1Q96HT8 127 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 DEPDC7Q96QD5 511 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 GBP3Q9H0R5 595 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 MSRB2Q9Y3D2 182 aa6.32□□□□□ -1.4
VPS41-210ENST00000462429 CCDC85CA6NKD9 419 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 PDPK1O15530 556 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 CLCN7P51798 805 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 TNK2Q07912 1038 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 BMS1Q14692 1282 aaKnown RBP6.31□□□□□ -1.4
VPS41-210ENST00000462429 IFI16Q16666 785 aaKnown RBP6.31□□□□□ -1.4
VPS41-210ENST00000462429 NETO1Q8TDF5 533 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 APBA2Q99767 749 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 EPN3Q9H201 632 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 TRIT1Q9H3H1 467 aaKnown RBP6.31□□□□□ -1.4
VPS41-210ENST00000462429 SNTG2Q9NY99 539 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 PRR13Q9NZ81 148 aa6.31□□□□□ -1.4
VPS41-210ENST00000462429 CDK11AQ9UQ88 783 aaPredicted RBP6.31□□□□□ -1.4
VPS41-210ENST00000462429 TMEM265A0A087WTH1 108 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 CBFA2T2O43439 604 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 SUSD5O60279 629 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 PPM1BO75688 479 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 TGFB1P01137 390 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 EPHX1P07099 455 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 ITGA4P13612 1032 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 CD247P20963 164 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms