RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 GREB1LQ9C091 1923 aaPredicted RBP23.68■■□□□ 1.38
COL9A3-202ENST00000452372 MYPNQ86TC9 1320 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 SGSM2O43147 1006 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 FGRP09769 529 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 HOXA7P31268 230 aaPredicted RBP23.67■■□□□ 1.38
COL9A3-202ENST00000452372 GRK4P32298 578 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 FCGRTP55899 365 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 ARHGEF10LQ9HCE6 1279 aa23.67■■□□□ 1.38
COL9A3-202ENST00000452372 ZYXQ15942 572 aaKnown RBP23.66■■□□□ 1.38
COL9A3-202ENST00000452372 CLEC10AQ8IUN9 316 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 RAET1EQ8TD07 263 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 INCENPQ9NQS7 918 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 PNMA3Q9UL41 463 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 TMX2Q9Y320 296 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 TACC3Q9Y6A5 838 aa23.66■■□□□ 1.38
COL9A3-202ENST00000452372 ORC4O43929 436 aa23.65■■□□□ 1.38
COL9A3-202ENST00000452372 EEF2P13639 858 aaKnown RBP23.65■■□□□ 1.38
COL9A3-202ENST00000452372 NEDD1Q8NHV4 660 aa23.65■■□□□ 1.38
COL9A3-202ENST00000452372 SH2D4AQ9H788 454 aa23.65■■□□□ 1.38
COL9A3-202ENST00000452372 CTNNA3Q9UI47 895 aa23.65■■□□□ 1.38
COL9A3-202ENST00000452372 IGKV6D-41A0A0C4DH26 115 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 ZNF213O14771 459 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 TSPY3P0CV98 308 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 TSPY8P0CW00 308 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 HAND2P61296 217 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 TFAP4Q01664 338 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 SHISA4Q96DD7 197 aa23.64■■□□□ 1.37
COL9A3-202ENST00000452372 PCP11498 1178 aaKnown RBP23.63■■□□□ 1.37
COL9A3-202ENST00000452372 FAM47AQ5JRC9 791 aa23.63■■□□□ 1.37
COL9A3-202ENST00000452372 ANKRD13CQ8N6S4 541 aa23.63■■□□□ 1.37
COL9A3-202ENST00000452372 NBPF3Q9H094 633 aa23.63■■□□□ 1.37
COL9A3-202ENST00000452372 ASCC2Q9H1I8 757 aaPredicted RBP23.63■■□□□ 1.37
COL9A3-202ENST00000452372 NYAP2Q9P242 653 aa23.63■■□□□ 1.37
COL9A3-202ENST00000452372 PLIN4Q96Q06 1357 aa23.63■■□□□ 1.37
COL9A3-202ENST00000452372 VCAM1P19320 739 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 FLT3LGP49771 235 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 ATP2B2Q01814 1243 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 AKNAD1Q5T1N1 836 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 SMCR8Q8TEV9 937 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-202ENST00000452372 STAG1Q8WVM7 1258 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 MTMR4Q9NYA4 1195 aa23.62■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L15C9J2P7 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L13C9JLJ4 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L11C9JVI0 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L18D6R9N7 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L22D6RA61 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L17D6RBQ6 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L19D6RCP7 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L20D6RJB6 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 CCL5P13501 91 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 IRX3P78415 501 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-202ENST00000452372 PTH1RQ03431 593 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 USP17L24Q0WX57 530 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 IMMTQ16891 758 aaKnown RBP23.61■■□□□ 1.37
COL9A3-202ENST00000452372 MFSD6Q6ZSS7 791 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 LPAR1Q92633 364 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 MKL1Q969V6 931 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 CEP95Q96GE4 821 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 P2RX7Q99572 595 aaKnown RBP23.61■■□□□ 1.37
COL9A3-202ENST00000452372 RNF41Q9H4P4 317 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-202ENST00000452372 VCPKMTQ9H867 229 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 LAMA4Q16363 1823 aa23.61■■□□□ 1.37
COL9A3-202ENST00000452372 TSPY2A6NKD2 308 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 RANBP6O60518 1105 aaKnown RBP23.6■■□□□ 1.37
COL9A3-202ENST00000452372 GCLCP48506 637 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-202ENST00000452372 FAM110CQ1W6H9 321 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 CATSPERGQ6ZRH7 1159 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 TBC1D10CQ8IV04 446 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 ESYT1Q9BSJ8 1104 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 CLIP2Q9UDT6 1046 aa23.6■■□□□ 1.37
COL9A3-202ENST00000452372 ADCY3O60266 1144 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 GJB1P08034 283 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 IRF5Q13568 498 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 KIAA1755Q5JYT7 1200 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 UBE2Q1Q7Z7E8 422 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 SLAIN1Q8ND83 568 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 RPAP3Q9H6T3 665 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-202ENST00000452372 TOMM22Q9NS69 142 aa23.59■■□□□ 1.37
COL9A3-202ENST00000452372 TNPO2O14787 897 aaKnown RBP23.58■■□□□ 1.37
COL9A3-202ENST00000452372 CDC45O75419 566 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 TTLL1O95922 423 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 ELNP15502 786 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 GJA8P48165 433 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 RRP12Q5JTH9 1297 aaKnown RBP23.58■■□□□ 1.37
COL9A3-202ENST00000452372 PPP4R3BQ5MIZ7 849 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 KIAA1211Q6ZU35 1233 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 PXYLP1Q8TE99 480 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 MAP4K1Q92918 833 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 UNC93B1Q9H1C4 597 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 GOPCQ9HD26 462 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 IL17RBQ9NRM6 502 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 U3KPZ7 1027 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-202ENST00000452372 MYH4Q9Y623 1939 aa23.58■■□□□ 1.37
COL9A3-202ENST00000452372 NT5C2P49902 561 aa23.57■■□□□ 1.36
COL9A3-202ENST00000452372 HERVK_113P62684 666 aa23.57■■□□□ 1.36
COL9A3-202ENST00000452372 RNF208Q9H0X6 261 aa23.57■■□□□ 1.36
COL9A3-202ENST00000452372 BIN2Q9UBW5 565 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-202ENST00000452372 GJD2Q9UKL4 321 aa23.57■■□□□ 1.36
COL9A3-202ENST00000452372 SYNPO2Q9UMS6 1093 aa23.57■■□□□ 1.36
COL9A3-202ENST00000452372 PEX10O60683 326 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms